Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2899 ATGGGGTCTATGAGCATCTCAAATTCAAATCCAAATCCAAACCCAAATGGAAATCTGAATCCGTGGACACCAAAGGATTGCTCTGAAGGAATCTGCAGCATCTCCTGCCCCCAGTGGTGTTACATAGTTTACTCTCCTCCTCCTCCGATTTTCCTCGGTGATGGTGATGATGACTCTTCAGGCTTTGAATTTTCACCTCTCATAGTTGCTGTGATTGGAATATTGGCTAGTACTTTCATCTTGGTCACTTACTACACCCTCATCTCGAGGTTCTGCAGGCGCAGGAACACCTCCAATGATGCTGCTGCTGCAGCAGAAGATGGCGACGGAAACAACAGCAGAGAATTGGCGCGAATTTCCTCTGCCAACTCTGGTTTGGATGAGGCTCTCATAAAATCGATTACAGTTTGTAAGTATAGCAAGGTTGGTGGAACGGTGGAAGGTCGAGATTGCTCGGTTTGTTTGAGCGAGTTTGAAGAGAATGAGAGCTTGAGATTGTTGCCTAAATGCAACCACGTTTTTCATCTCCCTTGCATTGACACTTGGCTTAAGTCTCATGCTACATGTCCTCTGTGTCGTTCGACTATCGCAGCCGCAGCCACCGCTGCTGTTGCCTGTCCGAATCCGGATGATCCGGATAGTCCATCGATTGAACCGCCACCGAGAGTCATTGTTAATGCCCTGGAACACCAGCAGAGGAGTAGCCGTGATGATGTCATTGTCGTCGTTGTCGAGAGTTCTGAGCAGCAAGGGAGGGTGGTGGCTAGTTTTGATGCTACCAAGTTTAGGGTGGAAGATGGAGACAGAGTGGAGCAAAGTGGGACAGAGAGATGA 834 0.4844 MGSMSISNSNPNPNPNGNLNPWTPKDCSEGICSISCPQWCYIVYSPPPPIFLGDGDDDSSGFEFSPLIVAVIGILASTFILVTYYTLISRFCRRRNTSNDAAAAAEDGDGNNSRELARISSANSGLDEALIKSITVCKYSKVGGTVEGRDCSVCLSEFEENESLRLLPKCNHVFHLPCIDTWLKSHATCPLCRSTIAAAATAAVACPNPDDPDSPSIEPPPRVIVNALEHQQRSSRDDVIVVVVESSEQQGRVVASFDATKFRVEDGDRVEQSGTER 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2899 277 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 19 232 IPR044675 -
Aed1g2899 277 PANTHER RING-H2 FINGER PROTEIN ATL53-RELATED 19 232 - -
Aed1g2899 277 SUPERFAMILY RING/U-box 146 197 - -
Aed1g2899 277 Pfam Ring finger domain 150 193 IPR001841 -
Aed1g2899 277 CDD RING-H2_PA-TM-RING 150 193 - -
Aed1g2899 277 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 202 IPR013083 -
Aed1g2899 277 SMART ring_2 151 192 IPR001841 -
Aed1g2899 277 ProSiteProfiles Zinc finger RING-type profile. 151 193 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2899 Aed-Chr1 24381201 24382034 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2899 17 204 C3H Transcription Factor Family AT3G03550 54.067 5.69e-67 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2899 - - gmx:102660020 337.421