Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2896 ATGGATAACAATAATTGGAGACCTAATCAAGGCACCGAGGCTGGTATGGATATTAGTGATTGGAGAGTTAGAGTGAGGTATGAGTCACGCCAAAGAATTGTCGACAAAATAACGGACACATTAAAAGGATTTCTTCTTCTTGATCCTATTCATACTCCGGAGAGATTGCATCAACTTCGGATGACTGCTCAAAGATATGAAGAGAGGATTTTTATTACTGCAGAAAGCAAGGTAGATTATCTACGACAAATATCTATGAAGATGGTTATGATGACTCAATCCCAGACCACCGTGGCCCCCTACTTTCCTCCAAATCAAGGTATTAATAATGTGGAAGATATTCCTAAAGAAGCTATCTGCAGAATTTGTTTGGTTGAATTGGGAGGTGCTAATACCCTTAGAGGTGCTAATACCCTTAAAATGGAGTGTAGCTGCAAAGGTGAACTTGCATTCCTACACCGAGAGTGTGCAGTTAAATGGTTTAAGATCAAAGGCAATAGAACATGTGATGTGTGCAATCAGGTGGTTAAGAATCTACATTTTCGTCATGTGTACAAGTACTAG 564 0.3954 MDNNNWRPNQGTEAGMDISDWRVRVRYESRQRIVDKITDTLKGFLLLDPIHTPERLHQLRMTAQRYEERIFITAESKVDYLRQISMKMVMMTQSQTTVAPYFPPNQGINNVEDIPKEAICRICLVELGGANTLRGANTLKMECSCKGELAFLHRECAVKWFKIKGNRTCDVCNQVVKNLHFRHVYKY 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2896 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 182 IPR013083 -
Aed1g2896 187 Pfam RING-variant domain 120 172 IPR011016 GO:0008270
Aed1g2896 187 ProSiteProfiles Zinc finger RING-CH-type profile. 112 179 IPR011016 GO:0008270
Aed1g2896 187 Pfam KIX domain 19 96 IPR036546 -
Aed1g2896 187 SUPERFAMILY RING/U-box 117 176 - -
Aed1g2896 187 SUPERFAMILY Kix domain of CBP (creb binding protein) 19 91 IPR036529 GO:0003712|GO:0006355
Aed1g2896 187 SMART ringv_2 119 173 IPR011016 GO:0008270
Aed1g2896 187 CDD RING_CH-C4HC3_MARCH 120 173 - -
Aed1g2896 187 Gene3D Coactivator CBP, KIX domain 20 99 IPR036529 GO:0003712|GO:0006355
Aed1g2896 187 PANTHER OS02G0165000 PROTEIN 84 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2896 Aed-Chr1 24360682 24366089 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2896 115 179 C3H Transcription Factor Family AT2G37950 46.154 7.87e-15 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2896 - K14972 gmx:100783762 130.183