Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aed1g2896 | ATGGATAACAATAATTGGAGACCTAATCAAGGCACCGAGGCTGGTATGGATATTAGTGATTGGAGAGTTAGAGTGAGGTATGAGTCACGCCAAAGAATTGTCGACAAAATAACGGACACATTAAAAGGATTTCTTCTTCTTGATCCTATTCATACTCCGGAGAGATTGCATCAACTTCGGATGACTGCTCAAAGATATGAAGAGAGGATTTTTATTACTGCAGAAAGCAAGGTAGATTATCTACGACAAATATCTATGAAGATGGTTATGATGACTCAATCCCAGACCACCGTGGCCCCCTACTTTCCTCCAAATCAAGGTATTAATAATGTGGAAGATATTCCTAAAGAAGCTATCTGCAGAATTTGTTTGGTTGAATTGGGAGGTGCTAATACCCTTAGAGGTGCTAATACCCTTAAAATGGAGTGTAGCTGCAAAGGTGAACTTGCATTCCTACACCGAGAGTGTGCAGTTAAATGGTTTAAGATCAAAGGCAATAGAACATGTGATGTGTGCAATCAGGTGGTTAAGAATCTACATTTTCGTCATGTGTACAAGTACTAG | 564 | 0.3954 | MDNNNWRPNQGTEAGMDISDWRVRVRYESRQRIVDKITDTLKGFLLLDPIHTPERLHQLRMTAQRYEERIFITAESKVDYLRQISMKMVMMTQSQTTVAPYFPPNQGINNVEDIPKEAICRICLVELGGANTLRGANTLKMECSCKGELAFLHRECAVKWFKIKGNRTCDVCNQVVKNLHFRHVYKY | 187 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aed1g2896 | 187 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 107 | 182 | IPR013083 | - | |
Aed1g2896 | 187 | Pfam | RING-variant domain | 120 | 172 | IPR011016 | GO:0008270 | |
Aed1g2896 | 187 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 112 | 179 | IPR011016 | GO:0008270 | |
Aed1g2896 | 187 | Pfam | KIX domain | 19 | 96 | IPR036546 | - | |
Aed1g2896 | 187 | SUPERFAMILY | RING/U-box | 117 | 176 | - | - | |
Aed1g2896 | 187 | SUPERFAMILY | Kix domain of CBP (creb binding protein) | 19 | 91 | IPR036529 | GO:0003712|GO:0006355 | |
Aed1g2896 | 187 | SMART | ringv_2 | 119 | 173 | IPR011016 | GO:0008270 | |
Aed1g2896 | 187 | CDD | RING_CH-C4HC3_MARCH | 120 | 173 | - | - | |
Aed1g2896 | 187 | Gene3D | Coactivator CBP, KIX domain | 20 | 99 | IPR036529 | GO:0003712|GO:0006355 | |
Aed1g2896 | 187 | PANTHER | OS02G0165000 PROTEIN | 84 | 179 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aed1g2896 | Aed-Chr1 | 24360682 | 24366089 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Aed1g2896 | 115 | 179 | C3H Transcription Factor Family | AT2G37950 | 46.154 | 7.87e-15 | 67.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aed1g2896 | - | K14972 | gmx:100783762 | 130.183 |