Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2891 ATGGCATCATCAAACGGTTTGAAAACTTGTTCCTCCGAATTATCCTTTAGCTTCTCTTCCACCTCCAAAGGCATATACCATAAACCATGTGTTGAACAAGAGAAGAGTAGTGGTGAGTTGACAATTATGAAGGAGAAGGGTGATAAATCTGATCAACAAGCTTCCAATACCATTTCCAATTCCCATATGGTTGTTAAGCTCCCCAATAAGGATGAATCAATTTGTGAGTCCAAAGTGGAGTTGGATCTTTTCAACCCGATGAAGTTGGGTGGTTCATACTCTTGTTCTAAGGCTAATAGTTACACTGAAAGGAGGGATGAGAAGAAGACAAATGAGGAGAAACCTAAGACTTTTTCTTGCAACTTTTGCAAGAAAGAGTTTTCTTCCCCACATGCTTTGGGAGGGCACCAAAATGCCCACAAGCAAGAGCGTGCTCTTGCAAAGCGTGGCAAAGGGAATATTAATGATGTTGGTGCTGCTTTAGGGCACTCTCAATCTTTTCCTTATTATCATCCCACACACTCCTTCCATGGATCCTATAATAATAGGGCACTTGGGGTTCGGATGGCATCTATGATTCACAAGCCATCATATAATAATTTAACCTCCTTTGGTCATAGATTGAGGATGGATGGTTTGCATGCAAATTTGAAGATATCTAAAGATGATGGTGGTAATATTGGACACATTCCCTTTGTTGGAGATTCTTCTTCTGCAAATGTTGCTGCCAAATCAAATTTGCCCATGGATAGGCAAATATTGAGTGCAACGGGTGGTGATCTTTCCAAGCTACGAGAAATATCTCTTTCTAATTCATTGATTTATCACTTAAGTTTTAAGTTTTGA 846 0.3972 MASSNGLKTCSSELSFSFSSTSKGIYHKPCVEQEKSSGELTIMKEKGDKSDQQASNTISNSHMVVKLPNKDESICESKVELDLFNPMKLGGSYSCSKANSYTERRDEKKTNEEKPKTFSCNFCKKEFSSPHALGGHQNAHKQERALAKRGKGNINDVGAALGHSQSFPYYHPTHSFHGSYNNRALGVRMASMIHKPSYNNLTSFGHRLRMDGLHANLKISKDDGGNIGHIPFVGDSSSANVAAKSNLPMDRQILSATGGDLSKLREISLSNSLIYHLSFKF 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2891 281 ProSitePatterns Zinc finger C2H2 type domain signature. 120 140 IPR013087 -
Aed1g2891 281 PANTHER ZINC FINGER PROTEIN 3-LIKE 1 201 - -
Aed1g2891 281 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 1 201 IPR044246 GO:0009788
Aed1g2891 281 SUPERFAMILY beta-beta-alpha zinc fingers 115 145 IPR036236 -
Aed1g2891 281 ProSiteProfiles Zinc finger C2H2 type domain profile. 118 145 IPR013087 -
Aed1g2891 281 Gene3D Classic Zinc Finger 93 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2891 Aed-Chr1 24297857 24298702 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2891 41 201 C2H2 Transcription Factor Family AT5G10970 36.646 2.51e-22 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed1g2891 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2891 - - gmx:102661483 228.409