Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2879 ATGAGACAGTCACCTTCGGATCTGAGACGACATTATATAGCCACGCTGGTGCTGCCCTTTGATTTTGTCTTCTTCGGCTTCGTCATTTCCTATTCTCAGCTTCTTCCAAATCTTCTTCTTCTCGTTCAGTGGGGGTTTCGTTCCTCTGTGCGTGATACGCAATTCGATACCATGCGGAAGAAGCTCGACACCCGTTTCCCCGCTGCTCGGATAAAGAAGATAATGCAAGCAGATGAGGATGTTGGAAAGATAGCGTTGGCAGTTCCTGTTTTAGTATCTAAAGCTCTGGAGTTATTTTTGCAAGATCTTTGTGACCGAACTTATGAAATAACCCTTCAGAGAGGAGCAAAGACCATGAATGCATTGCATTTGAAACATTGTGTACAAGGTTATAATGTTTTTGACTTTCTGAGAGACATTGTCAATAGAGTTCCTGACTATGGGCATGGCCATGGCCATGGCCACTCAGAGGCTGGAGCTGATGACCCTGCACTTCCAAAGAGAAGGAAAGCTGCTGGTGATGACGGCAATCACAGTGATGAAGAGTCTAAGAGGAGTAAGATGCATGAGTTGGGCAACACCGGCACTTCTGGTAGGGGAAGAGGCCGAGGTAGAGGAAGAGGCCGTGGTCGAGGGGCTCGAACTGTTGAAAGAGATATCTGTCATCAGCCTGTTGAATCCAAACCTTGCACCTGTATGCAGCAAAGTAGCAATAATATTCCTCATACAAGTGTGCCAATAGATAATGGTCCGCAATCCAAGGAATCACCAAAGGATAACATTGTGGTTTCTGAGGAAAGTACTCAATCTTTCCACAACATTGATCTGAATGCTAACTTAAATGAAAACGAAGACAAAAATGCTAGCACAGCTGTTCCGGCTTCATTGCCTGAGCCTGCCACTGCCATGGACATTAAACATGAAGAAATTCCAGGCTGGTCCCTATCTGATGTGGACAAGATGGCCATTGACACTATGCAGCTTGCAAACCTTGGTAGTCGACTAGAAGAGGATGAGGAAGATTATGATGAAGAAGGGTAA 1041 0.4534 MRQSPSDLRRHYIATLVLPFDFVFFGFVISYSQLLPNLLLLVQWGFRSSVRDTQFDTMRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNALHLKHCVQGYNVFDFLRDIVNRVPDYGHGHGHGHSEAGADDPALPKRRKAAGDDGNHSDEESKRSKMHELGNTGTSGRGRGRGRGRGRGRGARTVERDICHQPVESKPCTCMQQSSNNIPHTSVPIDNGPQSKESPKDNIVVSEESTQSFHNIDLNANLNENEDKNASTAVPASLPEPATAMDIKHEEIPGWSLSDVDKMAIDTMQLANLGSRLEEDEEDYDEEG 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2879 346 MobiDBLite consensus disorder prediction 210 224 - -
Aed1g2879 346 Gene3D Histone, subunit A 51 143 IPR009072 GO:0046982
Aed1g2879 346 MobiDBLite consensus disorder prediction 228 258 - -
Aed1g2879 346 MobiDBLite consensus disorder prediction 148 189 - -
Aed1g2879 346 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 65 128 IPR003958 -
Aed1g2879 346 SUPERFAMILY Histone-fold 47 145 IPR009072 GO:0046982
Aed1g2879 346 PANTHER HISTONE SUPERFAMILY PROTEIN 58 345 - -
Aed1g2879 346 MobiDBLite consensus disorder prediction 148 258 - -
Aed1g2879 346 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 58 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2879 Aed-Chr1 23975626 23980684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2879 58 335 CCAAT-HAP5 Transcription Factor Family AT3G12480 50.000 6.28e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Aed1g2879 CBFD_NFYB_HMF 1.8e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2879 K21752 - gmx:100810093 468.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2879 1 23975626 23980684 Aed1g2879 1 23975626 23980684 ECH