Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2878 ATGGCATCATCAAACTGTTTGAAAACATGTTCCTCTGAACTAGCCTCTAGCTTCTCTTCCACCTCCGAAGGCATATACCATAAACCATGTGTTCAAAGAGAGAAGAGTAGTGATGAATTGACAATTATGAAGGAGAAAAAGGGTGATAAATCTGATCCACAAGACCAACAAGCTTCAAATTCCAATTCCCATATGGTGTTGGACTTTGTTAAGCTCTCCAACAAAAAGGATGAATCGATTTGCAGCGCGAAAGTGGAGATGGATTTTTTCAACCCAATGAACTTGGGAGGTTCATCATATTCTTCTTCTAGGGCTAATAATTACCCTGAAGGGAAAGATGAGAAGAAGAATAATGAGGAGAAACCTAAGACTTTTTCTTGTAACTTTTGCAAGAAAGAGTTTTCTTCATCACAAGCTTTGGGAGGGCACCAAAACGCCCACAAGCAAGAGCGTGCCCTTGCAAAGCGTGGCAAAGGGAATATTGATGATGTTGGTGCTGCTTTAGGGCACTCTCATCCTTTTCTTTATTACCCTTTTTATCATCCCACACACTCCTTTTATGGATCCTATAATAATAGGGCACTTAATAATAGGGCACTTGGGGTTCGGATGGGGTCTATGATTCACAAGTCCTCATACCCTAATTCAACCTCGTATGGTTTTAGGATTGGTGGTCAAAGGTGGTCAAGACAAGATATGCTAAACCCTTCTCTTGATCATAGATTGAAGATGGAGGGTTTGGATGCAAATTTGAAGACTGAAGATGATCGTGGTACTATTGGATACATTCCCTTTCTTGGAGATCATTCTTCCACAAATGTTGCTACCATGGATGGGCCAACATTGAATACTATGGGTGGTGATCTTTCCAAGGAAGAAGAAAAATCTCTTACCGATTCTTCTGGGATTGATTTATCACTTAAGCTTTAA 930 0.4032 MASSNCLKTCSSELASSFSSTSEGIYHKPCVQREKSSDELTIMKEKKGDKSDPQDQQASNSNSHMVLDFVKLSNKKDESICSAKVEMDFFNPMNLGGSSYSSSRANNYPEGKDEKKNNEEKPKTFSCNFCKKEFSSSQALGGHQNAHKQERALAKRGKGNIDDVGAALGHSHPFLYYPFYHPTHSFYGSYNNRALNNRALGVRMGSMIHKSSYPNSTSYGFRIGGQRWSRQDMLNPSLDHRLKMEGLDANLKTEDDRGTIGYIPFLGDHSSTNVATMDGPTLNTMGGDLSKEEEKSLTDSSGIDLSLKL 309
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2878 309 Gene3D Classic Zinc Finger 106 163 - -
Aed1g2878 309 MobiDBLite consensus disorder prediction 100 122 - -
Aed1g2878 309 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 8 309 - -
Aed1g2878 309 MobiDBLite consensus disorder prediction 277 309 - -
Aed1g2878 309 MobiDBLite consensus disorder prediction 108 122 - -
Aed1g2878 309 ProSiteProfiles Zinc finger C2H2 type domain profile. 125 152 IPR013087 -
Aed1g2878 309 SUPERFAMILY beta-beta-alpha zinc fingers 122 152 IPR036236 -
Aed1g2878 309 Pfam C2H2-type zinc finger 125 149 - -
Aed1g2878 309 MobiDBLite consensus disorder prediction 28 63 - -
Aed1g2878 309 ProSitePatterns Zinc finger C2H2 type domain signature. 127 147 IPR013087 -
Aed1g2878 309 PANTHER ZINC FINGER PROTEIN JAGGED 8 309 IPR045320 GO:0003700
Aed1g2878 309 MobiDBLite consensus disorder prediction 28 53 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Aed1g2878 Aed-Chr1 23972198 23973127 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2878 123 234 C2H2 Transcription Factor Family AT5G10970 44.643 1.22e-20 87.8
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed1g2878 zf-C2H2_6 1.3e-05 CL0361
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2878 - - gmx:102663393 312.383