Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aed1g2878 | ATGGCATCATCAAACTGTTTGAAAACATGTTCCTCTGAACTAGCCTCTAGCTTCTCTTCCACCTCCGAAGGCATATACCATAAACCATGTGTTCAAAGAGAGAAGAGTAGTGATGAATTGACAATTATGAAGGAGAAAAAGGGTGATAAATCTGATCCACAAGACCAACAAGCTTCAAATTCCAATTCCCATATGGTGTTGGACTTTGTTAAGCTCTCCAACAAAAAGGATGAATCGATTTGCAGCGCGAAAGTGGAGATGGATTTTTTCAACCCAATGAACTTGGGAGGTTCATCATATTCTTCTTCTAGGGCTAATAATTACCCTGAAGGGAAAGATGAGAAGAAGAATAATGAGGAGAAACCTAAGACTTTTTCTTGTAACTTTTGCAAGAAAGAGTTTTCTTCATCACAAGCTTTGGGAGGGCACCAAAACGCCCACAAGCAAGAGCGTGCCCTTGCAAAGCGTGGCAAAGGGAATATTGATGATGTTGGTGCTGCTTTAGGGCACTCTCATCCTTTTCTTTATTACCCTTTTTATCATCCCACACACTCCTTTTATGGATCCTATAATAATAGGGCACTTAATAATAGGGCACTTGGGGTTCGGATGGGGTCTATGATTCACAAGTCCTCATACCCTAATTCAACCTCGTATGGTTTTAGGATTGGTGGTCAAAGGTGGTCAAGACAAGATATGCTAAACCCTTCTCTTGATCATAGATTGAAGATGGAGGGTTTGGATGCAAATTTGAAGACTGAAGATGATCGTGGTACTATTGGATACATTCCCTTTCTTGGAGATCATTCTTCCACAAATGTTGCTACCATGGATGGGCCAACATTGAATACTATGGGTGGTGATCTTTCCAAGGAAGAAGAAAAATCTCTTACCGATTCTTCTGGGATTGATTTATCACTTAAGCTTTAA | 930 | 0.4032 | MASSNCLKTCSSELASSFSSTSEGIYHKPCVQREKSSDELTIMKEKKGDKSDPQDQQASNSNSHMVLDFVKLSNKKDESICSAKVEMDFFNPMNLGGSSYSSSRANNYPEGKDEKKNNEEKPKTFSCNFCKKEFSSSQALGGHQNAHKQERALAKRGKGNIDDVGAALGHSHPFLYYPFYHPTHSFYGSYNNRALNNRALGVRMGSMIHKSSYPNSTSYGFRIGGQRWSRQDMLNPSLDHRLKMEGLDANLKTEDDRGTIGYIPFLGDHSSTNVATMDGPTLNTMGGDLSKEEEKSLTDSSGIDLSLKL | 309 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aed1g2878 | 309 | Gene3D | Classic Zinc Finger | 106 | 163 | - | - | |
Aed1g2878 | 309 | MobiDBLite | consensus disorder prediction | 100 | 122 | - | - | |
Aed1g2878 | 309 | PANTHER | AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED | 8 | 309 | - | - | |
Aed1g2878 | 309 | MobiDBLite | consensus disorder prediction | 277 | 309 | - | - | |
Aed1g2878 | 309 | MobiDBLite | consensus disorder prediction | 108 | 122 | - | - | |
Aed1g2878 | 309 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 125 | 152 | IPR013087 | - | |
Aed1g2878 | 309 | SUPERFAMILY | beta-beta-alpha zinc fingers | 122 | 152 | IPR036236 | - | |
Aed1g2878 | 309 | Pfam | C2H2-type zinc finger | 125 | 149 | - | - | |
Aed1g2878 | 309 | MobiDBLite | consensus disorder prediction | 28 | 63 | - | - | |
Aed1g2878 | 309 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 127 | 147 | IPR013087 | - | |
Aed1g2878 | 309 | PANTHER | ZINC FINGER PROTEIN JAGGED | 8 | 309 | IPR045320 | GO:0003700 | |
Aed1g2878 | 309 | MobiDBLite | consensus disorder prediction | 28 | 53 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aed1g2878 | Aed-Chr1 | 23972198 | 23973127 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Aed1g2878 | 123 | 234 | C2H2 Transcription Factor Family | AT5G10970 | 44.643 | 1.22e-20 | 87.8 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Aed1g2878 | zf-C2H2_6 | 1.3e-05 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aed1g2878 | - | - | gmx:102663393 | 312.383 |