Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2877 ATGGCATCATCATCACACGTTTTAGAAGTTTCCCCCTCTGAAGATCAAGCCTCTAGCATCTCTGCCACTTCCGAAGGCATTTCCCAAAAACATAGTGCTGAAGAAGAGAATAAAAATCATGATGAAGTCACAACAACAATGAAGGAGAAGGGTGTGAAATCTGAACAGGACCAAGCTTCCAATTCCAATATGGTGTTGGATTTTGTCAAGCTCTCCAAAGATGAATCAATTCGAGGGTTGAAATTGGAATTGGATTTTTTCAACCCTATGGGGGGTTCATCTTCTTCTAGGGCTAACAACAACAACACTGATCAAGGGAGAGATGAGAACAACAACAATAACAACAATGAGGAGAAATCATCATCAGAGGCTAATAAGACTTTTTCTTGCAGCTTTTGCAAGAAAGAGTTTTCTTCTTCACAAGCCTTGGGAGGGCACCAAAATGCACACAAGCAAGAGCGTGCTCTTGCAAAGCGTCGCCAAGGGATTGATAACAATGTTGGTGCTTTTGGGAACCCTCATTTTCTTTATTACCCTTATCATCACCCCACACGCTCTTTTTATGGATCATATAATAGGGCACTTGGGGTTAGAATGGAGTCTATGATTCACAAGCCATCGTATCCTTCTTCATCCTCACTTGGTTTTAGGTTAGGTCAAGGGTGGTCATCAACAAGACCACAAGAGATGCTAAACCCTTCTCTTGATAGATTAAGGATGGAGGGTTTGCATGCAAATAATAGTGGAATTAGGGTCCTAGGTGGGAGTGATAGTACAAATTCGATGACACAAGATCATGATCGTGATAGTACTATTGGACAAACTATTCCATTCCTTGAAGAATCTTCTACAAATGTTGCAACAAAATCAAACTCAGCACCATTGAGTACCGTGGGTGGTGGTGGTGGTGATCATCCCAATCCCAAGCAAGAAGCACCCTCAAGTCCTGATTCTTCAGATGAGATTGATTTGTCACTTAAACTTTAA 987 0.4144 MASSSHVLEVSPSEDQASSISATSEGISQKHSAEEENKNHDEVTTTMKEKGVKSEQDQASNSNMVLDFVKLSKDESIRGLKLELDFFNPMGGSSSSRANNNNTDQGRDENNNNNNNEEKSSSEANKTFSCSFCKKEFSSSQALGGHQNAHKQERALAKRRQGIDNNVGAFGNPHFLYYPYHHPTRSFYGSYNRALGVRMESMIHKPSYPSSSSLGFRLGQGWSSTRPQEMLNPSLDRLRMEGLHANNSGIRVLGGSDSTNSMTQDHDRDSTIGQTIPFLEESSTNVATKSNSAPLSTVGGGGGDHPNPKQEAPSSPDSSDEIDLSLKL 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2877 328 PANTHER ZINC FINGER PROTEIN 3-LIKE 9 328 - -
Aed1g2877 328 ProSitePatterns Zinc finger C2H2 type domain signature. 130 150 IPR013087 -
Aed1g2877 328 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 9 328 IPR044246 GO:0009788
Aed1g2877 328 SUPERFAMILY beta-beta-alpha zinc fingers 125 155 IPR036236 -
Aed1g2877 328 MobiDBLite consensus disorder prediction 88 124 - -
Aed1g2877 328 MobiDBLite consensus disorder prediction 1 28 - -
Aed1g2877 328 MobiDBLite consensus disorder prediction 251 297 - -
Aed1g2877 328 MobiDBLite consensus disorder prediction 89 124 - -
Aed1g2877 328 MobiDBLite consensus disorder prediction 249 328 - -
Aed1g2877 328 Pfam C2H2-type zinc finger 128 152 - -
Aed1g2877 328 MobiDBLite consensus disorder prediction 1 63 - -
Aed1g2877 328 Gene3D Classic Zinc Finger 103 168 - -
Aed1g2877 328 MobiDBLite consensus disorder prediction 29 55 - -
Aed1g2877 328 ProSiteProfiles Zinc finger C2H2 type domain profile. 128 155 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2877 Aed-Chr1 23964197 23965183 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2877 73 252 C2H2 Transcription Factor Family AT5G10970 37.297 7.14e-21 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed1g2877 zf-C2H2_6 1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2877 - - gmx:102663393 400.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2877 1 23964197 23965183 Aed1g2877 1 23964197 23965183 ECH