Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2855 ATGGGGTTTGAACCATTGAATTGGTACTGCCAGCCAGCACAAGACAGCATTTGGGCTAAAGCAGTGGATAGTGCTTTTGGGTCCTATACACCTTGTGCAATCAACACTCTTGTTATCTCCATTTCCAATTTGGTTCTTGTGGGTTTGTGCTTATATCGGATTTGGCTTACTGCTTTCAATGCTAAAGCTCAGAGGTTTTGTCTGAGTTCAAATTACTATAACTATCTTCTGGGAATGTTGGCTGCTTATTGTGCCGCTCAACCTTTGTTGAGATTGCTAACTGGAAATTCAGCTTTCAACCTTGATGGAGAAATCGGCTTCGCTCCTTTTGAGGTAACGGCTCTGATCGTCGAAACACTTACTTGGAGCTCAATGATGACTCTCATCCTTTTGGAAACAAAGGTTTATATCAGACAATTTAGATGGTATGTGCGCTTTGGAGTTATATATGTTTTGGTGGGAGATATTGTAATGCTTAACCTTCTTCTGTCAGTGAAAGATTACTGCAACAGATCTGCTCTGTTTCTTTACATTAGCAGTGTCATCTGCCAGGTGTTGTTTGGTACCTTACTTCTTGTTTACATTCCTAATCTGGTTCCTTATTCTGGCCATACAACAATGCTAGCTGAGCTACCTGACCATGGTGAATATGAACCTATTTGTGGTGAAGAACAAGTTTTCCCTGAGAGGAATGCTGGTGTATTCTCTAGAATATGTTTTGGATGGATAACTCCACTCATGAAGCAAGGCTACAGAAAACCCATAACGGAAAAGGATGTTTGGAAGCTTGATGAATGGGATCGAGCCGAGACATTAAATGAAAAGTTCCAAAAGTGTTGGATGTTAGAGTTTCAAAGCTCTAACCCATGGCTTTTAAGACCATTGAACAGTAGCCTGGGGAAAAGGTTTTGGATGGGAGGCTTCTTTAAGATTGGTAATGATCTTTCTCAGTTTGTGGGACCTATTTTGCTGAATCATCTCTTAGATTCGATGCAAAGAGGAGATCCGTCTTGGATTGGTTACATCTACGCCTTCTCAATATTTGTTGGAGTGACAGTGGGAGTTCTTTGTGAAGCACAGTATTTCCAGAATGTTATGCGTGTTGGTTTTCGGCTTAGATCAACTTTGGTGGCTGCTATATTTAGAAAATCTTTAAGGCTAACTAACGATGGTCGAAAGAAGTTCACATCTGGGAGGCTTATGAATATGATAACAACAGATGCAAATGCATTACAGCAAATATGTCAACAACTTCATGGACTATGGTCAGCACCATTCCGTATCACTGTAGCTATGGTTCTCCTATACCAGCAACTAGGTGTTGCTTCACTTGTTGGATCATTAATGCTAGTTCTCATTATTCCACTGCAGGCAAGTTTTACATTTGTGATTAGCAAAATGCGAAAACTGACAAAGGAAGGACTGCAACAGACAGACAAAAGAGTTGGTCTCATGAATGAAATTCTGGCTGCCATGGATACTGTAAAATGTTATGCATGGGAAACGAGCTTTCAGTCTAGAATTCTAAGCATACGAGACAAAGAGCTATCATGGTTCCGCAAAGCCCAGCTGCTATATACTCTTAACAATTTTATACTAAACAGCATCCCTGTTCTTGTGACGGTGACCTCATTTGGAATGTTCACTTTACTGGGTGGAGAATTGACACCTTCAAGGGCATTTACCTCATTATCTCTGTTTGCAGTTTTGCGCTTTCCTTTAAATATGCTACCAAACTTACTAAGTCAGGTAGCAAATGCACAGGTCTCGTTGCAACGCCTGGAGGAACTGTTCTTAGCCGAGGAGCGAAATTTAAAACAAAATCCACCTATTGAACCAGGACTTCCAGCCATCTCAATTGAGAATGGATACTTTTCATGGGATCCTAAGGAAGAGAAGCCAACATTATCAAATATCAATGTGGAAATACCAGTTGGCAGCTTAGTTGCAATCATTGGCGGTACTGGAGAAGGCAAAACATCACTTATTTCAGCAATGATTGGAGAGTTACCTCCTTTAGCCGATGGAAATGCTACAATCAGAGGCACCGTTGCTTATGTTCCTCAGATTTCATGGATTTACAATGCCACAGTTCGTGAAAACATATTATTTGGATCAAAATTTGAATTTGAACGATATCAGAAGGTCATTGATGTGACTGCTTTACAGCATGATCTCAACTTACTACCTGGACGTGATTTTACAGAGATTGGAGAACGAGGAGTCAATATTAGTGGTGGACAAAAGCAAAGAGTTTCCATAGCTAGAGCTGTATACTCAAATTCAGATGTATATATATTTGATGATCCTTTGAGTGCTCTTGATGCTCATATTGCTCAAGAGGTTTTCAGGAACTGTATAAAGGAAGGGCTGCGAGGAAAAACCAGGGTTCTTGTCACCAACCAGCTACATTTTCTCCCTCATATGGATAAAATCATTCTGGTTAGTGAAGGCATGATTAAAGAGGAGGGAACCTTTGAGGAGTTATCAAAGAGTGGGCCTCTATTTCAGAAACTAATGGAAAATGCAGGGAAAATGGAACAAGCAGATAATGACGAAGATAGAGATAGTCATGACAAGGCTAATGATTTACCCTTGAATAATGAAGCAATTGTGGAATTACCAAATGATGCAAGCTATGAGAAGAAAGGAAAATTACAAAAATCAGTACTAATTAAGAAAGAAGAGCGGGAAACAGGCGTGGTTAGTTGGAAAGTTATAATGCGGTACAAATCTGCATTGGGAGGACTGTGGGTAGTTTCCATACTCTTTGCTTGCTATACATTAACAGAAGCTCTTCGAATTTCAAGTAGCACATGGTTAAGTGTGTGGACATCTCAAGATTCCACTGCAGATTATGAACCGGCATATTTTCTTTTGATCTATGCACTTTTCTCATTTGGACAGGTATCTGTGGCACTTGCAAACTCTTATTGGTTGATCATTTCAAGTCTTCGTGCTGCAAAAAACTTGCACAATGCAATGCTAGATAAAATCCTCCGGGCTCCTATGGTATTCTTCCAAACCAATCCGGTTGGCCGCATAATTAATAGGTTTGCAAAAGATACGGGTGATATAGATACCAATGTTTTTAATTTGGTGAATAATTTTCTGGGGCAAGTCTGGCAACTGCTTTCAACATTTGTTCTTATAGGCACTGTGAGCACCATTTCCCTGTGGACCATAATGCCACTTCTGATCTTCTTTTATGCAGCTTATATATATTACCAGAGCACGGCTCGAGAGGTGAAGCGAATGGATTCTATTACCAGATCTCCTGTTTATGCCCATTTTGGTGAATCACTGAATGGTTTGTCGAGCATCCGTGCTTACAAAGCATATGACAGAATGGCACACATCAATGGAAAATTCATGGATAACAACATCAGATTTACTCTTGTGAATATCAGTTCGAATCGTTGGCTCACCATAAGGCTAGAAACATTAGGAGGCCTCATGATTTGGCTGATAGCAACATCTGCCGTCTTGCAGAATGCAAAAGCTGCAAACCAGGCAGTGTTTGCATCTACAATGGGTTTACTTCTCAGTTATACTTTGAACATAACAAATCTCTTGAGTGGTGTCCTCAGACAAGCAAGTAGAGCTGAAAACAGTTTAAATTCAGTTGAGCGTGTTGACACGTACATAAATCTAGAAACTGAGGCTCCTGGCGTAATTGAGATGAACCGTCCCCCGCCAGGATGGCCAACATCAGGATCAATTGAGTTTGAGGATGTTGTTCTGAGATACCGGCCGGAACTTCCTCCAGTGCTGCATGGATTGTCCTTTGCAGTACCTCCAACTGAGAAGATAGGGGTAGTTGGAAGAACTGGTGCAGGAAAGTCTAGCATGCTTAATGCATTATTCCGGATTGTGGAACTACAGAAAGGGAAAATTATTATTGATGGTTGTGATATTTCTACGTTCGGACTAGCAGATCTACGAAAAGTTCTAACTATCATACCACAATCTCCAGTTCTTTTCTCTGGAACTGTTCGTTTCAATCTTGATCCATTTAATGAACACAATGATGCTGACCTATGGCAAGCTTTAGAAAGGGCGCATTTGAAGGATGTAATAAGAAGAAATACATTTGGTCTTGATGCTCAGGTCTCAGAGGGAGGGGACAATTTTAGTGTTGGACAGAGGCAACTGTTAAGTCTAGCTAGAGCATTGCTACGAAGATCAAAGGTTCTTGTCCTGGATGAAGCTACTGCTGCTGTAGATGTTAGAACTGATGCCCTTATACAGAAAACTATCAGACAAGAATTTCAGTCCTGCACAATGCTCATCATTGCACACAGACTAAATACAATCATTGACTGCAATCGGATTCTGCTGCTCGATTCTGGCCAGGTTCTTGAATATAGTTCACCAGAGTTACTCTTACAAAATGAAGGAACTGCTTTCTACAAGATGGTTCAAAGTACTGGACCTGAGAATGCTCAGTATCTATGCAGCCTAGTATTTGGAAAGACAGAGAATAACTCTAATGAATATGACAAGGAGTTGGAAAGCCATATGAGACAGTTAGCTTCTTCTCACTGGACTGCTGCTACTCAGTTTGCCATAGCTGCTACCCTTTCTTCATTACACCAGCTCCTTCAAAATCCAAGTCTTGCTATCTTGAAGAGGCTGTCTCTAGACAACATTCAACAACTAGAACTTGATTTTGAAGGGAGATCTTTTGACTAA 4695 0.406 MGFEPLNWYCQPAQDSIWAKAVDSAFGSYTPCAINTLVISISNLVLVGLCLYRIWLTAFNAKAQRFCLSSNYYNYLLGMLAAYCAAQPLLRLLTGNSAFNLDGEIGFAPFEVTALIVETLTWSSMMTLILLETKVYIRQFRWYVRFGVIYVLVGDIVMLNLLLSVKDYCNRSALFLYISSVICQVLFGTLLLVYIPNLVPYSGHTTMLAELPDHGEYEPICGEEQVFPERNAGVFSRICFGWITPLMKQGYRKPITEKDVWKLDEWDRAETLNEKFQKCWMLEFQSSNPWLLRPLNSSLGKRFWMGGFFKIGNDLSQFVGPILLNHLLDSMQRGDPSWIGYIYAFSIFVGVTVGVLCEAQYFQNVMRVGFRLRSTLVAAIFRKSLRLTNDGRKKFTSGRLMNMITTDANALQQICQQLHGLWSAPFRITVAMVLLYQQLGVASLVGSLMLVLIIPLQASFTFVISKMRKLTKEGLQQTDKRVGLMNEILAAMDTVKCYAWETSFQSRILSIRDKELSWFRKAQLLYTLNNFILNSIPVLVTVTSFGMFTLLGGELTPSRAFTSLSLFAVLRFPLNMLPNLLSQVANAQVSLQRLEELFLAEERNLKQNPPIEPGLPAISIENGYFSWDPKEEKPTLSNINVEIPVGSLVAIIGGTGEGKTSLISAMIGELPPLADGNATIRGTVAYVPQISWIYNATVRENILFGSKFEFERYQKVIDVTALQHDLNLLPGRDFTEIGERGVNISGGQKQRVSIARAVYSNSDVYIFDDPLSALDAHIAQEVFRNCIKEGLRGKTRVLVTNQLHFLPHMDKIILVSEGMIKEEGTFEELSKSGPLFQKLMENAGKMEQADNDEDRDSHDKANDLPLNNEAIVELPNDASYEKKGKLQKSVLIKKEERETGVVSWKVIMRYKSALGGLWVVSILFACYTLTEALRISSSTWLSVWTSQDSTADYEPAYFLLIYALFSFGQVSVALANSYWLIISSLRAAKNLHNAMLDKILRAPMVFFQTNPVGRIINRFAKDTGDIDTNVFNLVNNFLGQVWQLLSTFVLIGTVSTISLWTIMPLLIFFYAAYIYYQSTAREVKRMDSITRSPVYAHFGESLNGLSSIRAYKAYDRMAHINGKFMDNNIRFTLVNISSNRWLTIRLETLGGLMIWLIATSAVLQNAKAANQAVFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNSVERVDTYINLETEAPGVIEMNRPPPGWPTSGSIEFEDVVLRYRPELPPVLHGLSFAVPPTEKIGVVGRTGAGKSSMLNALFRIVELQKGKIIIDGCDISTFGLADLRKVLTIIPQSPVLFSGTVRFNLDPFNEHNDADLWQALERAHLKDVIRRNTFGLDAQVSEGGDNFSVGQRQLLSLARALLRRSKVLVLDEATAAVDVRTDALIQKTIRQEFQSCTMLIIAHRLNTIIDCNRILLLDSGQVLEYSSPELLLQNEGTAFYKMVQSTGPENAQYLCSLVFGKTENNSNEYDKELESHMRQLASSHWTAATQFAIAATLSSLHQLLQNPSLAILKRLSLDNIQQLELDFEGRSFD 1564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2855 1564 Pfam ABC transporter 1258 1406 IPR003439 GO:0005524
Aed1g2855 1564 CDD ABCC_MRP_domain1 618 818 - -
Aed1g2855 1564 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 614 841 IPR027417 -
Aed1g2855 1564 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1241 1475 IPR003439 GO:0005524
Aed1g2855 1564 SUPERFAMILY ABC transporter transmembrane region 904 1221 IPR036640 GO:0005524|GO:0016021
Aed1g2855 1564 Pfam ABC transporter transmembrane region 922 1158 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed1g2855 1564 Pfam ABC transporter transmembrane region 304 574 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed1g2855 1564 SUPERFAMILY ABC transporter transmembrane region 290 594 IPR036640 GO:0005524|GO:0016021
Aed1g2855 1564 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 618 842 IPR003439 GO:0005524
Aed1g2855 1564 Coils Coil 577 604 - -
Aed1g2855 1564 SMART AAA_5 645 826 IPR003593 -
Aed1g2855 1564 SMART AAA_5 1267 1460 IPR003593 -
Aed1g2855 1564 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1232 1474 IPR027417 -
Aed1g2855 1564 CDD ABC_6TM_ABCC_D2 920 1216 IPR044726 GO:0140359
Aed1g2855 1564 Pfam ABC transporter 636 771 IPR003439 GO:0005524
Aed1g2855 1564 ProSitePatterns ABC transporters family signature. 744 758 IPR017871 GO:0005524
Aed1g2855 1564 ProSitePatterns ABC transporters family signature. 1378 1392 IPR017871 GO:0005524
Aed1g2855 1564 CDD ABC_6TM_ABCC_D1 306 594 IPR044746 GO:0140359
Aed1g2855 1564 Gene3D - 1225 1477 IPR027417 -
Aed1g2855 1564 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 304 586 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed1g2855 1564 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 38 1496 - -
Aed1g2855 1564 CDD ABCC_MRP_domain2 1239 1459 - -
Aed1g2855 1564 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 922 1204 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed1g2855 1564 PANTHER ABC TRANSPORTER C FAMILY MEMBER 11-RELATED 38 1496 - -
Aed1g2855 1564 Gene3D ABC transporter type 1, transmembrane domain 284 598 IPR036640 GO:0005524|GO:0016021
Aed1g2855 1564 Gene3D ABC transporter type 1, transmembrane domain 882 1222 IPR036640 GO:0005524|GO:0016021
Aed1g2855 1564 Gene3D - 599 865 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2855 Aed-Chr1 23737199 23753118 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2855 625 834 Calmodulin-binding Proteins AT2G36910 29.148 5.10e-22 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2855 - K05665 gmx:100811691 2857.4