Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2852 ATGGAGGTGGTTGAACTGAGAAAGATCCTGCCAATACTCGAAGGTGGTGGCGGTGGGAGTGGAATAATAACACCCACGTCCTCGTCATGCTCGAACATTTGCAAATATTGGGCAAATGGCAACCGCTGCAGACACGGGAAGCGGTGTTGGAATCTGCATTCATGGTCAGATGGTATCTCTGTTCATCCCGAAGAAGATAACCCAAGAAGAGCTACGCGACTGGTTTGGTGGACGGCGCCCCCGAAAAACTTCGTTAAGATCAATTGCGACGGAGCTTTCTCCACCTTTCATGGCAACAAAGTGGTTGCTGCAGGAGGGGTCATGAGAGACTGCGACGGCAAATTCATCACCGGCTTTTCCAGTCGCCTGATGAACTGCAACACCGTCGAGGAGGCCGAGTTATGGGCAATTCATATCGGAATGGAAATAGCATTGTGCATGGGATTTTTAAACATGGTCGTGGAGAGTGATTCCTTTGCCGCTGTGGAATTCATTAACAGTGGAGTGTTCTTCGGACAAGATGATTCTAGGGCTGTGCTTGTTTCTTCGATCCTTTGTCTTGGTAACGAGGCTAATAAGATTTCTTGGAACCACGTTTTCAGAGACACGAACTCCGTGGCAGATAGTTTTGCCAAGCATGGTTTGTCTTTGCCTCGCTTGGGTGTTAAGCTTTTCAGTTTTCCTCCCGAGTTCAGTGTGGGCCCTCTTTTTGCGGATAAAGTGGGGACCATATACTCACGTTGA 744 0.4866 MEVVELRKILPILEGGGGGSGIITPTSSSCSNICKYWANGNRCRHGKRCWNLHSWSDGISVHPEEDNPRRATRLVWWTAPPKNFVKINCDGAFSTFHGNKVVAAGGVMRDCDGKFITGFSSRLMNCNTVEEAELWAIHIGMEIALCMGFLNMVVESDSFAAVEFINSGVFFGQDDSRAVLVSSILCLGNEANKISWNHVFRDTNSVADSFAKHGLSLPRLGVKLFSFPPEFSVGPLFADKVGTIYSR 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2852 247 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 30 - -
Aed1g2852 247 Gene3D - 84 217 IPR036397 GO:0003676
Aed1g2852 247 PANTHER OS05G0353850 PROTEIN 68 233 - -
Aed1g2852 247 ProSiteProfiles Zinc finger C3H1-type profile. 28 56 IPR000571 GO:0046872
Aed1g2852 247 Pfam Reverse transcriptase-like 88 213 IPR002156 GO:0003676|GO:0004523
Aed1g2852 247 CDD RNase_H_like 87 212 IPR044730 -
Aed1g2852 247 SUPERFAMILY Ribonuclease H-like 83 218 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2852 Aed-Chr1 23712734 23713477 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aed1g2852 RVT_3 3.2e-24 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2852 - - pvu:PHAVU_006G058500g 189.119