Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2848 ATGACAACAGCAGAAGCTGAGAGGGTAGTGGTGATCCATGATGCATCAAGAGATGTTAATTCAACAGCAGTCCAAGGGGCCCTTGAATGGTTTTCTGCTAAAGCTGGAGATCAGCTTATATTTGTTGCTATCCTTGATTGGATTAGCAGTCCTATGGGTTACATGGTCAGAGCTGATTCCAATTCAATGTTTGTTTCAACAAACAAGAAAATAATTGAAAAAAGGCTTAAGAAAAAAAAGGAAGAATATCTCATGAACCCGAACATCAAGAAGATCTCCAACTACTGTATATTGAATGAGATTGGATTCCAATTAGAAGTGCTTGTAGGCACTACTGCAGAGGTTGCTTCTGATGCTGCCAAGAAATTTCAGGCGACAAGGTTGATAGTTAGACAAATTCACAAAGATATGAAGCATTTCATGCGCAACCTCCCTTGTGGTATGTATAGGATAACAAGTGACAATTCAATTGAGAGGTTGAAAGATCCAAAATCAACGGCCAGTACCAAAACATCTGCTGACAAGCAAGAAAATGTAAGCTATAAAGAAATGTTTCCAGGAAGTGAAGAGGAGGAACTGTCCAGGTCTTCATCAAGTGATCTGTTGACATTGACTGGAGTTTCCAGTCAGTGGAGTACAGAAGCCTCCACTTCTAGTTTCGGAAGCTTGTGGTATGGTCACCAATACCAAGAGGGAAAGTTTTATTCAAATACAGAACAAGAAACAACAGGGAACCAATCTCTATTTCAGATTTCAGAGAATGAAGAAACGAGCCAAAAAGAACTAAATCAAAAAGAGCAGCACAGTAGAAACAATGAAACATCTCATGTGGAGGAAGAATTTGCAAATCCACTTTGTTCTGTGTGCAATAACAGACGACCAAAAGTTGCATTGAAGATAGATTTCAGTTATGCAGAGCTCTATGCTGCTACACTAGGATTTTCTCCTACGAACTTTCTCTCAGAAGGTGGATTTGGATCTCTGGGAGACTTTGGATTAGCAAGAAATCAAAATCAAGACTCGATACACTCAACGGAAGTTGTTGGAACTTTGGGGTATTTGGCACCAGAATATGCAGAACATGGCAAAGTGTCTTCAAAAACTGATGTATACTCTTTTGGGGTGGTTCTACTGCAACTAATAACAGGAATGAGAACCACAGACAAAAGACTTGGAGGAAGAAGTCTTGTGGGATGGGCAAGACCACTTTTAAAAGAGAGGAACTATCCAGATTTAATTGATGGAAGGATCATTAACTCTCATGATGTCCATCAACTATTTTGGATGGTTAGAATAGCAGAAAAATGTCTAAGCAGAGAGCCTCAAAGGAGACTAGATATGGTTCAGGTTGTTGATGCATTGACTGACATAGTGGAAGGAAGAACATGTGACATAATACTAAGAGATTACTCCCCTGCAAGGTCAGATTCATTCCATAGTGCATCAGACTCTGATGAATCTGAAGATGAAGAAAGGCAAGAATCCGTTGGGTTCGAAGATGAGTCACTAAGTCACAGTTCAGAGTCCATAGAAAGTAATAGCACAAGTCAGATGATGCAGATGATGATTGTAAGACAGCCTCCATCCCCTCCAATTCAGAGCATCTCTTCATGTAGCTCAAGCTCTTTTAAGTTTCATTATGAGTCAACTAGTGATGGTGAAGCACAGAATGAAGGGGAACTCAATTCTTAG 1692 0.3989 MTTAEAERVVVIHDASRDVNSTAVQGALEWFSAKAGDQLIFVAILDWISSPMGYMVRADSNSMFVSTNKKIIEKRLKKKKEEYLMNPNIKKISNYCILNEIGFQLEVLVGTTAEVASDAAKKFQATRLIVRQIHKDMKHFMRNLPCGMYRITSDNSIERLKDPKSTASTKTSADKQENVSYKEMFPGSEEEELSRSSSSDLLTLTGVSSQWSTEASTSSFGSLWYGHQYQEGKFYSNTEQETTGNQSLFQISENEETSQKELNQKEQHSRNNETSHVEEEFANPLCSVCNNRRPKVALKIDFSYAELYAATLGFSPTNFLSEGGFGSLGDFGLARNQNQDSIHSTEVVGTLGYLAPEYAEHGKVSSKTDVYSFGVVLLQLITGMRTTDKRLGGRSLVGWARPLLKERNYPDLIDGRIINSHDVHQLFWMVRIAEKCLSREPQRRLDMVQVVDALTDIVEGRTCDIILRDYSPARSDSFHSASDSDESEDEERQESVGFEDESLSHSSESIESNSTSQMMQMMIVRQPPSPPIQSISSCSSSSFKFHYESTSDGEAQNEGELNS 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2848 563 Gene3D Transferase(Phosphotransferase) domain 1 314 467 - -
Aed1g2848 563 PANTHER OS01G0253100 PROTEIN 328 483 IPR045271 GO:0004714|GO:0006468
Aed1g2848 563 PANTHER OS01G0253100 PROTEIN 8 327 IPR045271 GO:0004714|GO:0006468
Aed1g2848 563 ProSiteProfiles Protein kinase domain profile. 103 458 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g2848 563 MobiDBLite consensus disorder prediction 258 277 - -
Aed1g2848 563 PANTHER TYROSINE KINASE FAMILY PROTEIN 328 483 - -
Aed1g2848 563 SMART serkin_6 235 458 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g2848 563 MobiDBLite consensus disorder prediction 160 199 - -
Aed1g2848 563 PANTHER TYROSINE KINASE FAMILY PROTEIN 8 327 - -
Aed1g2848 563 MobiDBLite consensus disorder prediction 254 277 - -
Aed1g2848 563 MobiDBLite consensus disorder prediction 474 538 - -
Aed1g2848 563 Pfam Protein kinase domain 318 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g2848 563 SUPERFAMILY Protein kinase-like (PK-like) 320 478 IPR011009 -
Aed1g2848 563 MobiDBLite consensus disorder prediction 507 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2848 Aed-Chr1 23685812 23692390 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2848 328 502 Trihelix Transcription Factor Family AT1G70460 40.541 1.09e-27 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Aed1g2848 Pkinase 1.1e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2848 - - gmx:100794450 497.278