Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2841 ATGTCGAAAAACAAAAAGAAGAAGAGCGATAGCGAAGAAGACGACGACGTTTTCTACTACCGCTACAGCAGCGTAAACCCAACCCAAACCCAACAACACAATCCTAATCCCAATTCCAATCCGAAATCTAACAACATTAACAACAAGGGATCATCTTCTTCTTCGTCCTTGGCTCCGTCGAAATCAACGTTGTACGTTTCGAACATCGATTACTCCCTCACGAACTCCGACCTCCACACGCTCTTCTCCACGTTCGGCCGCATCGCGCGCGTGACGGTCCTCAAGGACCGCCACACGCGCCTCAGCCGCGGCGTCGCCTTCGTGCAGTTCGTGTCGCGCGACGACGCCCGCTCCGCCGCCGCGCAGATGGACGGGAAAGTCCTCAACGGCCGCACCCTCTCCGCCTCCATCGCCGCCGACAACGGCCGCGCCCCCGAGTTCATCCGCAAGCGCGTCTACCGCGACACCGACCGCTGCTTCGAGTGCGGTCTCCAGGGCCACCTCTCCTATGACTGCCCGCGCAACCAGCTCGGCCCCCGCCAGCGCCCCGAGCCCAAACGCCCCCGCCACGGTGGGCCCCACCACCACCCCCGCCGCCGTAACGACAACGACGATGGCCACGACGAAGACTCCGATGGCGGCGCCGCGGAGGAGCGGTTTGAGGATGATAATTGGGCTTCTGTCGTGGATGACGGTGCTGACGAGAGGTTATTGGCGGGAAATAGACATGATGATGGTGGTGGTGTTGTGGATGCAAAGATTGGCTTCCAAGGAAGCCTAGGACTGATTGCCGCTGTAGAGAAGGATTGA 810 0.5988 MSKNKKKKSDSEEDDDVFYYRYSSVNPTQTQQHNPNPNSNPKSNNINNKGSSSSSSLAPSKSTLYVSNIDYSLTNSDLHTLFSTFGRIARVTVLKDRHTRLSRGVAFVQFVSRDDARSAAAQMDGKVLNGRTLSASIAADNGRAPEFIRKRVYRDTDRCFECGLQGHLSYDCPRNQLGPRQRPEPKRPRHGGPHHHPRRRNDNDDGHDEDSDGGAAEERFEDDNWASVVDDGADERLLAGNRHDDGGGVVDAKIGFQGSLGLIAAVEKD 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2841 269 MobiDBLite consensus disorder prediction 197 228 - -
Aed1g2841 269 MobiDBLite consensus disorder prediction 171 228 - -
Aed1g2841 269 SMART rrm1_1 63 136 IPR000504 GO:0003723
Aed1g2841 269 MobiDBLite consensus disorder prediction 22 59 - -
Aed1g2841 269 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 9 243 - -
Aed1g2841 269 ProSiteProfiles Zinc finger CCHC-type profile. 158 174 IPR001878 GO:0003676|GO:0008270
Aed1g2841 269 Gene3D - 149 191 - -
Aed1g2841 269 SUPERFAMILY RNA-binding domain, RBD 29 145 IPR035979 GO:0003676
Aed1g2841 269 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 9 243 IPR044598 GO:0000398|GO:0005689
Aed1g2841 269 MobiDBLite consensus disorder prediction 1 19 - -
Aed1g2841 269 SMART c2hcfinal6 158 174 IPR001878 GO:0003676|GO:0008270
Aed1g2841 269 SUPERFAMILY Retrovirus zinc finger-like domains 142 175 IPR036875 GO:0003676|GO:0008270
Aed1g2841 269 CDD RRM_ZCRB1 63 138 IPR034219 -
Aed1g2841 269 MobiDBLite consensus disorder prediction 1 59 - -
Aed1g2841 269 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 64 133 IPR000504 GO:0003723
Aed1g2841 269 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 62 140 IPR000504 GO:0003723
Aed1g2841 269 Gene3D - 1 146 IPR012677 -
Aed1g2841 269 SMART rrm2_1 63 136 IPR003954 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2841 Aed-Chr1 23619139 23622513 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2841 64 138 Eukaryotic Initiation Factors Gene Family AT1G34140 37.333 1.57e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2841 K13154 - gmx:100814914 339.347