Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2826 TTTGAGAAATGGAGGCCCCAAAACGTTCGCCTATGGCTAGGAAAGGAACTGGATCCAACGGACAATCCATACAACTATTTGCTAACCATTTTAAAGTTAGAATGGGCAAGAATGATGGCTACTTCTACCATTATGATGAACCCTGTTGAAGCCAAGGGTATAGGGAGAAAGGTCCTAGATCAACTTTGCAGAACATATGCTGAACTGGAAAACGTGAGTTTTGCATATGATGGTGAGAAAAGTTTGTTCACTTTTGGTCCTCTACCAGGTCTGAGGCTTCAATTCCCTGTTGTGATAGAGGATTCTTCATCAAATAGGGGATGCCTACTTGTTCGCCAATCCTTCTTTCAGAACAATCCAAGAAATAATACAGATATAGGAGGTGGTGTGCAAGGCTGCCGTGGTTTTCATTCTAGCTTTCGAGTCACACAAGGAGGTTTATCTCTCAACATGGATGTGACAACTACAATGGTTGTAAAGCCTGGCCGTGTGGTGGATTTTCTCATCGATAATCAATGTGTTCAGAATCCACACTCGATTAATTGGATCAAGGTGATAGATATGTTATTTATATTAACGAAAAAGGGTACGAATGGTGAAGTGCAAGAAAGTGAAATCACGATTTATGAGTACTTCGAAAACCATAAAAAGATTCACCTGAAATACTCTGCTGATATGCCATGCATCAATGTTGGCAAACCAAAACGTCCATCTTATTTTCCAATAGAGCTTTGTGAATTGGTCTCGTTGCAGAGATACACCAAGTCTCTAACAAATTTGCAAAGGGCTCATCTAGTGGAGAAGACAAGGCAAAGGCCCCAAGACAGGAGAGCAGCTTTGGAAGAACTTTTATGTGGAAGAGGCGAGGATCTCATTCCCCGAAATGGACGTTGGAATTTCAACAATAAGCAACTCTTTGATGGTGCGAGAACTGGACGTTGGGCCATCGTAAACTTCTCAGCTCGGTGTAACACAAATCACTTAGTCGAACTTATCATGAGGTGTGCTCAAGCTAAAGGGATGGAAATGGATGAACTCTTCCAGCATGTAATTGAAGAGGAGAGTAGCTTCAGAAAGGAGTCACCACATGTCAGGGTAGAGAAAATGTATCTTAAGTGTCGCGAAATTCTGCCCAGAATCCCTTACTTTCTGTTGTGTATTCTTCCCGAGAAAAAGAATTGTGATATTTATGGTCCCTGGAAGAAGAAATGTCTTGTTGAGTTAGGGATTAGAACACAATGTATTGCACCAGGTCAAAAAATGAATGATCAGTACATTACTAATGTGCTCCTGAAAATTAATGCAAAGTTCGGAGGGATGAATTCTCTTCTGTCAATGGAGCGTTTTCGAAGAATTCGTTTAGTTTCTGATGTACCTACCTTAATTCTTGGTATGGATGTTTCTCATGGATCTCCTGGTCGATCAGATGTGCCTTCTATTGCTGCGGTTGTGAGCTCAAGAAGTTGGCCTGAAATTTCACGTTATAGAGCTATAGTTCGCACACAACCATCAAAAGTTGAGATTGTTCAGTCTCTATTCCTGCCTGGGGCCAATTCAAATGAGGATGGTGGTATCATGAGGGAGGTGCTATTAGATTTTGAAAAAACTTCAAAAGGAAAAAAGCCTCAACATATTATAATATTCAGGGATGGAGTGAGTGAATCACAATTCAACAAAGTGCTCAACGACGAGTTAAGTAAAATCATTGAGTCATCGAGAACTGTTATCGACAACACTATCTGCCACCCGAAAAACAATGACTTCTACTTGTGTGCTCAAGCTGGCATGATTGGGACAAGTCGACCAACTCATTACCATGTTTTACACGATGAAATCGGGTTCTCAGTTGATGAAATGCAAGAATTGGTGCATTCTCTATCTTATGCGTACCAGAGGAGCACAACTGCTGTGTCATTAGTTGCTCCAATTTGCTATGCCCACTTGGCAGCTGCTCAGATGGCACAATTTGTGAAGTTTGATGAACATTATTCTGAGACTTCTTCCAGTCAGGGTGCTGCTGCTAATGCATCTTCAGTTCCTCCATTGCCACGTCTTCACCAACAAGTCATCGACACCATGTTCTTTTGTTAA 2091 0.4137 FEKWRPQNVRLWLGKELDPTDNPYNYLLTILKLEWARMMATSTIMMNPVEAKGIGRKVLDQLCRTYAELENVSFAYDGEKSLFTFGPLPGLRLQFPVVIEDSSSNRGCLLVRQSFFQNNPRNNTDIGGGVQGCRGFHSSFRVTQGGLSLNMDVTTTMVVKPGRVVDFLIDNQCVQNPHSINWIKVIDMLFILTKKGTNGEVQESEITIYEYFENHKKIHLKYSADMPCINVGKPKRPSYFPIELCELVSLQRYTKSLTNLQRAHLVEKTRQRPQDRRAALEELLCGRGEDLIPRNGRWNFNNKQLFDGARTGRWAIVNFSARCNTNHLVELIMRCAQAKGMEMDELFQHVIEEESSFRKESPHVRVEKMYLKCREILPRIPYFLLCILPEKKNCDIYGPWKKKCLVELGIRTQCIAPGQKMNDQYITNVLLKINAKFGGMNSLLSMERFRRIRLVSDVPTLILGMDVSHGSPGRSDVPSIAAVVSSRSWPEISRYRAIVRTQPSKVEIVQSLFLPGANSNEDGGIMREVLLDFEKTSKGKKPQHIIIFRDGVSESQFNKVLNDELSKIIESSRTVIDNTICHPKNNDFYLCAQAGMIGTSRPTHYHVLHDEIGFSVDEMQELVHSLSYAYQRSTTAVSLVAPICYAHLAAAQMAQFVKFDEHYSETSSSQGAAANASSVPPLPRLHQQVIDTMFFC 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2826 696 SUPERFAMILY Ribonuclease H-like 381 656 IPR012337 -
Aed1g2826 696 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 43 99 - -
Aed1g2826 696 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 573 695 - -
Aed1g2826 696 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 97 187 - -
Aed1g2826 696 SMART DUF1785_2 109 161 IPR014811 -
Aed1g2826 696 Gene3D paz domain 180 255 - -
Aed1g2826 696 ProSiteProfiles Piwi domain profile. 383 658 IPR003165 GO:0003676
Aed1g2826 696 CDD PAZ_argonaute_like 202 248 - -
Aed1g2826 696 Gene3D - 452 571 IPR036397 GO:0003676
Aed1g2826 696 ProSiteProfiles PAZ domain profile. 202 249 IPR003100 GO:0005515
Aed1g2826 696 PANTHER PROTEIN ARGONAUTE 8-RELATED 573 695 - -
Aed1g2826 696 PANTHER PROTEIN ARGONAUTE 8-RELATED 187 282 - -
Aed1g2826 696 PANTHER PROTEIN ARGONAUTE 8-RELATED 97 187 - -
Aed1g2826 696 PANTHER PROTEIN ARGONAUTE 8-RELATED 283 570 - -
Aed1g2826 696 PANTHER PROTEIN ARGONAUTE 8-RELATED 43 99 - -
Aed1g2826 696 SMART Piwi_a_2 383 658 IPR003165 GO:0003676
Aed1g2826 696 SUPERFAMILY PAZ domain 156 282 IPR036085 GO:0005515
Aed1g2826 696 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 187 282 - -
Aed1g2826 696 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 283 570 - -
Aed1g2826 696 Gene3D - 281 445 - -
Aed1g2826 696 Pfam Piwi domain 574 658 IPR003165 GO:0003676
Aed1g2826 696 Pfam Piwi domain 384 573 IPR003165 GO:0003676
Aed1g2826 696 Gene3D - 572 696 IPR036397 GO:0003676
Aed1g2826 696 Pfam PAZ domain 202 265 IPR003100 GO:0005515
Aed1g2826 696 Pfam Argonaute linker 1 domain 111 159 IPR014811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2826 Aed-Chr1 23429287 23437360 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2826 49 696 Eukaryotic Initiation Factors Gene Family AT5G43810 30.440 2.48e-99 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2826 K11593 - gmx:100812218 841.647