Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2817 ATGAGTTCTGATAGGCCACTTGTAGTTTTTCCAACAGCTTCTAGCAGTAGTAACTACCAACAAGACCCTCTTACCACCACAGTTCCTCATCAGCTTCCAAAAACAAAGTCAAGTAATTTAAGCAGCCCTTTTGAGAACACTCTCAACTCATCATCACGCAGAAGTTCTATGTCCATTCACTCTTCTGGGAGCAGGAGCAACAACTCTATTCATGAAGTGAGTTTGAACCTTTCAGATTCCAAATCCAAACCTGCTGTGAGGTATGGCTCAAAGGGTGCAGATTCTGATCAAGGACTCAGCATGTCACAGAGAGAGCTGAGAGATGAGGATGCAAGGTTAGTGTACATAAACGACCCTTTGAAAACCAACGAATCTTTTGAGTTTTCAGGGAACTCTATCAGAACAAGCAAGTACACCTTCCTCACTTTCATTCCAAGGAACCTCTTTGAACAGTTCCACAGGGTTGCATACATCTACTTTCTCATAATCGCTATTCTCAACCAGCTTCCTCAGCTTGCGGTGTTCGGAAGAACGGTTTCCATCTTGCCACTGGCCTTTGTTCTGTTTGTCACAGCAGTGAAGGATGTGTACGAAGATTGGAGAAGGCACAAGAGTGATAAAATCGAGAACAACAGGATGGCATCGGTTATTATGGTTGATGATCTAGAAAGAAGAAGAAGCTTTGTGGAGAAAGCATGGAATGATGTTAGAGTTGGTGAGGTGATAAAGATCAAGGCAAATGAAGCCATCCCTTGTGACATTGTGTTGCTATCAACTAGTGATCCAACTGGGGTAGCATATGTGCAAACCATTAATCTTGATGGTGAGTCCAATTTGAAGACAAGGTATGCAAAGCAAGAGACACATGGTAGAGAGGGGGATTTTGTTGGTGGTGTGATCAAGTGTGAGAAACCAAATAGGAACATTTATGGATTTCTTGCTAACATGGAAGTTGATGGCAAGAAGTTGTCACTTGGATCCTCTAACATTGTGCTTAGAGGGTGTGAACTCAAGAACACTAGTTGGGCTATTGGTGTTGCTGTGTATTGTGGGAGTGAGACCAAGGCTATGCTGAATAACTCTGGAGCTCCTTCTAAGAGGAGTAGGTTGGAGACACGCATGAACTCTGAGATCATTTGGCTCTCTTTCTTCCTTGTAGCACTGTGTTCAACCACCTCAGCTTGCGCTGCAGTGTGGCTGAAGCGCCACAAGGATGAGTTGGATTTGTTACCATATTATAGGAAACTCGACTTTTCGGACGAGGGGGAGGTGGATAGCTATGAGTACTATGGATGGGGGGTGGAGATTCTCTTCACATTCCTCATGTCAGTTATAGTGTTCCAGGTCATGATTCCCATTTCCTTGTACATTTCAATGGAGCTTGTGAGGGTTGGTCAGGCCTACTTCATGATCCAAGACGATAGAATGTATGATGAGGCAACAAAGTCAAGATTTCAGTGCAGGGCTTTGAACATTAATGAGGATTTGGGGCAGATTAAGTATGTTTTCTCAGACAAAACTGGCACTCTCACTCAGAACAAGATGGAGTTTCAATGTGCAAGCATCTGGGGGGTTGATTACATGGATGGAAAGGTCTTCAGACCAAAGATGAAGGTGAAAGTTAATCCAGAGCTTTTGCAGCTATCAAGAAGTGGACTTCAAAATGTGGAGGGAAAAAGGATTCATGATTTCTTTCTAGCACTGGCAACCTGCAACACTATTGTGCCTCTTGTTGTTGACACACCTGACCCTGATGTCAAGCTGATAGATTACCAAGGAGAGTCACCAGATGAACAAGCACTAGCTTATGCTGCTGCTGCCTATGGTTTTATGCTCATAGAACGGACCTCTGGCCATATAGTCATTGATATTCATGGACAAAGACGAAAGTAA 1893 0.4353 MSSDRPLVVFPTASSSSNYQQDPLTTTVPHQLPKTKSSNLSSPFENTLNSSSRRSSMSIHSSGSRSNNSIHEVSLNLSDSKSKPAVRYGSKGADSDQGLSMSQRELRDEDARLVYINDPLKTNESFEFSGNSIRTSKYTFLTFIPRNLFEQFHRVAYIYFLIIAILNQLPQLAVFGRTVSILPLAFVLFVTAVKDVYEDWRRHKSDKIENNRMASVIMVDDLERRRSFVEKAWNDVRVGEVIKIKANEAIPCDIVLLSTSDPTGVAYVQTINLDGESNLKTRYAKQETHGREGDFVGGVIKCEKPNRNIYGFLANMEVDGKKLSLGSSNIVLRGCELKNTSWAIGVAVYCGSETKAMLNNSGAPSKRSRLETRMNSEIIWLSFFLVALCSTTSACAAVWLKRHKDELDLLPYYRKLDFSDEGEVDSYEYYGWGVEILFTFLMSVIVFQVMIPISLYISMELVRVGQAYFMIQDDRMYDEATKSRFQCRALNINEDLGQIKYVFSDKTGTLTQNKMEFQCASIWGVDYMDGKVFRPKMKVKVNPELLQLSRSGLQNVEGKRIHDFFLALATCNTIVPLVVDTPDPDVKLIDYQGESPDEQALAYAAAAYGFMLIERTSGHIVIDIHGQRRK 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2817 630 SUPERFAMILY HAD-like 490 540 IPR036412 -
Aed1g2817 630 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 128 627 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Aed1g2817 630 Gene3D - 482 499 - -
Aed1g2817 630 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 435 522 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aed1g2817 630 Gene3D - 500 512 IPR023214 -
Aed1g2817 630 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 15 629 - -
Aed1g2817 630 MobiDBLite consensus disorder prediction 1 83 - -
Aed1g2817 630 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 15 629 - -
Aed1g2817 630 SUPERFAMILY Calcium ATPase, transmembrane domain M 94 497 IPR023298 -
Aed1g2817 630 ProSitePatterns E1-E2 ATPases phosphorylation site. 505 511 IPR018303 -
Aed1g2817 630 SUPERFAMILY Calcium ATPase, transduction domain A 224 356 IPR008250 -
Aed1g2817 630 MobiDBLite consensus disorder prediction 1 103 - -
Aed1g2817 630 Pfam Phospholipid-translocating ATPase N-terminal 114 180 IPR032631 -
Aed1g2817 630 Gene3D - 185 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2817 Aed-Chr1 23355229 23357635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2817 57 630 Primary Pumps ATPases AT5G04930 65.372 0.0 811
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2817 K14802 - gmx:100813836 1025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2817 1 23355229 23357635 Aed1g2817 1 23355229 23357635 ECH