Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2816 ATGGATATTACCCTTTTCTCTTCTAATAAATCATCCCATTATGAGCATTGCAGGTTCAACGTCTTGGGTATGCATGAATTTGACAGTGACAGAAAGAGAATGTCAGTTATATTGGGTTACCCTGACAATTCTGTGAAAGCATTTGTCAAAGGAGCAGACACATCCATGCTTAACGTAATAGACAAGTCATTTAAAATGGACATAGTAAGAGCCACTGAAGCACATCTCAACTCTTACTCTTCCATGGGTTTGAGGACACTTGTTATTGGCATGAGAGACTTGAATGCTTCAGAGTTTCAGCAATGGCATGCATCCTTTGAGGCAGCAAGCACTGCGGTGTTCGGAAGGGCCGCAATGCTCCGCAAGGTTTCGAGCATTGTAGAGAACAGCCTCAGCATATTGGGAGCATCTGCCATTGAGGATAAACTGCAGCAAGGTGTGCCTGAGTCCATTGAGTCTCTGAGGGTTGCAGGCATCAAAGTATGGGTTCTGACTGGGGACAAACAAGAAACTGCCATATCCATTGGCTACTCCTCAAAGCTCCTTACTAGTAACATGACTCAGATTGTAATCAATAGCAAGAGCAGAGAATCATGCAGAAAAAGTTTGCAAGATGCACTTGTCATGTCTAAAAAGCTCATGTCCAACAATGCTGAAGGAACTTCAAATGCAACTCCAGTAGCCTTGGTTATTGATGGTACCAGCCTTCTATTTGAACTTGCAAGTACATGTTCTGTTGTTCTATGTTGCCGAGTCGCTCCGCTGCAAAAGGCTGGGATTGTTGCCCTTGTGAAGAATAGGACATCTGACATGACACTAGCCATTGGAGATGGTGCTAATGATGTCTCAATGATCCAAATGGCTGATGTTGGAGTTGGCATCAGTGGACAAGAGGGTCGACAAGCTGTAATGGCATCAGATTTTGCAATGGGGCAGTTTAGGTTTTTAGTTCCTCTCTTATTGGTACATGGTCACTGGAATTACCAACGGCTCGGTTACATGATACTGTACAATTTTTACAGAAATGCTGTCCTTGTTCTTGTCTTATTTTGGTATGTGCTCTTCACTGCCTTCACTTTGACAACTGCTATAAATGAATGGAGCTCCACACTATACTCAATAATCTACACTTCATTGCCAACTATAATTGTTGGCATTCTCGACAAGGATCTTGGTAAAAGGACCCTCCTAAAACATCCTCAACTTTATGGGGCAGGACAGAGACATGAGGCCTACAACAAGAAACTCTTTGCATTAACAATGTTAGACACTTTGTGGCAAAGCATGGTTATCTTCTGGGCACCCCTCTTTGCATATTGGAGTAGCACAGTTGATGTGGCAAGCATTGGAGACCTTTGGACTCTTGGAGTTGTTATTTTGGTTAATTTGCACTTGGCCATGGATGTCATAAGGTGGTATTGGGTGACACATGCTGTCATTTGGGGGTCTATTGCTGCAACTTTCATTAGTGTCATGGTCATTGATGCTATCCCTAGTCTTTCTGGCTACTGGGCCTTCTTTAATGTTGCAGGAACTAGATTGTTCTGGTTATTGTTGCTTGGAATCATAGTGGCAGCTTTGCTTCCACGTTTGGTTGTAAAATTTGTTTATCAATATTATTTTCCTAATGATATTCAGATTTGTAGAGAAGCAGAGAAGGCTGATTATGAAAGGGTTGTTGAAAGTGAACAGATCGAAATGCTTCCTATCTCAGATAATCATCCATCAAGATAA 1734 0.421 MDITLFSSNKSSHYEHCRFNVLGMHEFDSDRKRMSVILGYPDNSVKAFVKGADTSMLNVIDKSFKMDIVRATEAHLNSYSSMGLRTLVIGMRDLNASEFQQWHASFEAASTAVFGRAAMLRKVSSIVENSLSILGASAIEDKLQQGVPESIESLRVAGIKVWVLTGDKQETAISIGYSSKLLTSNMTQIVINSKSRESCRKSLQDALVMSKKLMSNNAEGTSNATPVALVIDGTSLLFELASTCSVVLCCRVAPLQKAGIVALVKNRTSDMTLAIGDGANDVSMIQMADVGVGISGQEGRQAVMASDFAMGQFRFLVPLLLVHGHWNYQRLGYMILYNFYRNAVLVLVLFWYVLFTAFTLTTAINEWSSTLYSIIYTSLPTIIVGILDKDLGKRTLLKHPQLYGAGQRHEAYNKKLFALTMLDTLWQSMVIFWAPLFAYWSSTVDVASIGDLWTLGVVILVNLHLAMDVIRWYWVTHAVIWGSIAATFISVMVIDAIPSLSGYWAFFNVAGTRLFWLLLLGIIVAALLPRLVVKFVYQYYFPNDIQICREAEKADYERVVESEQIEMLPISDNHPSR 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2816 577 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 12 550 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Aed1g2816 577 Pfam Phospholipid-translocating P-type ATPase C-terminal 303 543 IPR032630 -
Aed1g2816 577 SUPERFAMILY HAD-like 128 323 IPR036412 -
Aed1g2816 577 SUPERFAMILY Calcium ATPase, transmembrane domain M 324 542 IPR023298 -
Aed1g2816 577 Pfam haloacid dehalogenase-like hydrolase 265 293 - -
Aed1g2816 577 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 13 575 - -
Aed1g2816 577 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 245 361 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aed1g2816 577 PRINTS P-type cation-transporting ATPase superfamily signature 275 294 - -
Aed1g2816 577 PRINTS P-type cation-transporting ATPase superfamily signature 157 167 - -
Aed1g2816 577 Pfam Cation transport ATPase (P-type) 18 57 - -
Aed1g2816 577 Gene3D - 1 110 IPR023299 GO:0000166
Aed1g2816 577 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 14 144 IPR023299 GO:0000166
Aed1g2816 577 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 13 575 - -
Aed1g2816 577 Gene3D - 130 315 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2816 Aed-Chr1 23351096 23354971 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2816 15 577 Primary Pumps ATPases AT5G04930 68.118 0.0 806
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2816 K14802 - gmx:100813836 1007.28