Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2806 ATGGAAGGATCATCATCGGGTATCGTGAGAAAAGGAGCATGGAGTCAATGTGAAGATAACCTTCTGAGAGAGTGCGTGAACCTTTATGGGGAAGGAAAATGGCACCTTGTTCCTCAAAGAGCAGGGTTGAACAGATGCCGCAAGAGTTGTAGATTGAGAAGGTTGAACTATCTAAAACCAGATATCAAGCGTGGAGATTTCAGTGAAGAAGAGGTTGATTTGATGATCAGATTGCATAAGCTTTTAGGAAACAGATGGTCCCTAATTGCAGGGAGACTTCCGGGAAGGACATCGAACGACGTGAAAAACTACTGGAACACGTACATACGCCGTAAAGTAGTACTACAGAAATCACGGAAGAAAGACAATGATGACGAACACAACAACGATGTTAATATGGCGATGGTGACAGTTACACCAACACTACAACGAGTGCAGCAGCACCAAGTGATAAAGCCAGTTCCTCGAACATTAACAAAAACAACAGCATCCCCATTCTTTATTAATACAAGTTCCGAAGTTGAAGGTGTTATAAGAAGCAGCACTGTAGAAGCGGGTGGTACTGGAGCAAATTCATCTGGGTCCGAGGAGAATTGGTGGGAAACTTTGTTATTCGAAGAAGACAACAATAATGCAGTGCTTAACAGCAACAACAGCACGTGCTTCTTTGTTGGTGGGGCACTCGATGAACTTTGGGACGAGGAGATCAATCCAATTGCTAATTGTGATGATGATGAACAATTTTTTCTTACACAAGGTGAAAATTGGAGTGATTTTCTTCTTCACATAGAAGATTAA 798 0.4211 MEGSSSGIVRKGAWSQCEDNLLRECVNLYGEGKWHLVPQRAGLNRCRKSCRLRRLNYLKPDIKRGDFSEEEVDLMIRLHKLLGNRWSLIAGRLPGRTSNDVKNYWNTYIRRKVVLQKSRKKDNDDEHNNDVNMAMVTVTPTLQRVQQHQVIKPVPRTLTKTTASPFFINTSSEVEGVIRSSTVEAGGTGANSSGSEENWWETLLFEEDNNNAVLNSNNSTCFFVGGALDELWDEEINPIANCDDDEQFFLTQGENWSDFLLHIED 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2806 265 CDD SANT 67 109 IPR001005 -
Aed1g2806 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 113 IPR017930 -
Aed1g2806 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 58 IPR017930 -
Aed1g2806 265 Gene3D - 66 135 - -
Aed1g2806 265 Gene3D - 11 63 - -
Aed1g2806 265 ProSiteProfiles Myb-like domain profile. 6 58 IPR001005 -
Aed1g2806 265 Pfam Myb-like DNA-binding domain 11 58 IPR001005 -
Aed1g2806 265 Pfam Myb-like DNA-binding domain 64 108 IPR001005 -
Aed1g2806 265 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 9 161 - -
Aed1g2806 265 SUPERFAMILY Homeodomain-like 10 105 IPR009057 -
Aed1g2806 265 SMART sant 63 111 IPR001005 -
Aed1g2806 265 SMART sant 10 60 IPR001005 -
Aed1g2806 265 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Aed1g2806 265 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 9 161 - -
Aed1g2806 265 CDD SANT 13 58 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2806 Aed-Chr1 23258822 23259963 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2806 3 204 MYB Transcription Factor Family AT1G66370 47.273 7.05e-55 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed1g2806 Myb_DNA-binding 2.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2806 - K09422 gmx:100781091 297.36