Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2801 ATGGCTTTGAGGGTTATAGCGATTTTTTCCGTTTCTACAGTATTAAGCTTTGTGGGTCTGCAGTTATGCACAGACTTGCCTTTGGATAAACTTAGATCAGATGGTCTAATCAGCTGGAATTTAATTCACTTGGACAATGCCAGCCAAGACATTGAGTTGCCTTTGGGTTTGTACACCACCATAGGGCTACTGGTGAATTGCATGATCAATGTATTTATCCTTCTCAATCTTTGTCTCAAGGCTGTGTTTTTCACGGAGTTATATGCTTCTGAAACTCGCAAACTGGTTGAGCGTCTCATTAATTATATCATTTACAAGGGGACATTTCTACCGCTGATTGTGCCACCAACAATTTATCAAGCAGGTCTTTGGTCAACATGGTTGACTGTGCTTTGTTCTTTGAAGATGTTTCAAGCTTTGGCTAGAGATCGTTTGGAACGGCTGAATGCATCTCCGTCTGCCACACCCTGGACATATCTTCGTGTATATTCAGCATTGTTATTTGTTTTCATGGTTGATCTTCTCTGGATAAGGTTTTGTCTGACAATATATAGAACACATGGGTCCTCTATGTATCTGTTATTATTCTTTGAGCCTTTCAGTATTGCTTTTGAGACCCTACAGGCCATTTTGGTACATGGATTTCAGTTGCTAGACATATGGATGCATCATTCAGCTTGCCATAGCAGTGATTTCCAAACACCTAAACTGCTTGACACGTTAACTGCAGGTTCATTGTTGGAATTGAAGGGAATTCTCATTCGGAACTTGGGTTTTTTCCTAGACATGGCAACATTTTTTATGGCACTTGGCCATTACTTGTATATATGGCGGCTTCATGGCATGGCTTTCCATCTTGTAGATGCAGTTCTATTTCTAAATATACGTGCATTGCTTAGTGCAATAATAAATCGCATAAAAGGCTTTATCAGGCTAAGGATAGCTCTAGGAACACTTCATGCAGCTCTTCCTGATGCAACAACTGAGGAGCTAAGAGCATATGATGATGAATGTGCTATTTGTAGAGAACCAATGGCTAAGGCTAAAAAGCTAAACTGCAATCATCTCTTCCATCTTGCTTGTCTGAGATCTTGGTTGGATCAAGGGCTGACCGAGATATACACTTGTCCAACATGCCGAAAGCCTCTTTTTGCGGGTGTGCCTGAAAATGAAACAAACTCCAATGCAGGGACAATAGCTAGTGATGAGCAACTTGCACGACAAATAAGTGCTGGATTGGATCGGCCAAACTCTGCTAGACATACCATGCCTACAGGATTGTATCCAAATCAGACACTAAACACTCCTGAAGGTGTTCCTTGGAGGGCTGCAGGGGTGGACTCAGGTTGGTTGCATTCTTGGCCAAATCAGGGTGTTGATGGAGCCGGTCCATCTACTGCTATCAGAACAGTTGGACTGGGAAGAGTTCAAATGATGATGAGGCATATTGCATCTGTTGGAGAAACCTATGCTCAGACTGCCTTTGAAGATACTGCGTGGAACCTTTGGCCCATTAATCCCTCTCAGGCTTCTGCAAGTGCTTCAACCATTCCTCCTCCCCCTGCTGCAAGATTGCCAGAAAGAACTGCTAGTTTACATTTAAGGACTGTTTCACAGTCTGCTAATGATAGTGTCACGAATATACTTGCCATGGCTGATACTGTTCGGGAAGTTCTACCTCATATTCCAGATGACATGATATTCCAGGACTTGCAAAGGACAAATTCAGTCACAGTTACTGTGAATAATCTTCTTCAAATGTGA 1764 0.4229 MALRVIAIFSVSTVLSFVGLQLCTDLPLDKLRSDGLISWNLIHLDNASQDIELPLGLYTTIGLLVNCMINVFILLNLCLKAVFFTELYASETRKLVERLINYIIYKGTFLPLIVPPTIYQAGLWSTWLTVLCSLKMFQALARDRLERLNASPSATPWTYLRVYSALLFVFMVDLLWIRFCLTIYRTHGSSMYLLLFFEPFSIAFETLQAILVHGFQLLDIWMHHSACHSSDFQTPKLLDTLTAGSLLELKGILIRNLGFFLDMATFFMALGHYLYIWRLHGMAFHLVDAVLFLNIRALLSAIINRIKGFIRLRIALGTLHAALPDATTEELRAYDDECAICREPMAKAKKLNCNHLFHLACLRSWLDQGLTEIYTCPTCRKPLFAGVPENETNSNAGTIASDEQLARQISAGLDRPNSARHTMPTGLYPNQTLNTPEGVPWRAAGVDSGWLHSWPNQGVDGAGPSTAIRTVGLGRVQMMMRHIASVGETYAQTAFEDTAWNLWPINPSQASASASTIPPPPAARLPERTASLHLRTVSQSANDSVTNILAMADTVREVLPHIPDDMIFQDLQRTNSVTVTVNNLLQM 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2801 587 SMART ring_2 338 379 IPR001841 -
Aed1g2801 587 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 312 386 IPR013083 -
Aed1g2801 587 ProSiteProfiles Zinc finger RING-type profile. 338 380 IPR001841 -
Aed1g2801 587 Pfam CUE domain 551 587 IPR003892 GO:0043130
Aed1g2801 587 PANTHER E3 UBIQUITIN PROTEIN LIGASE RIN3 10 587 - -
Aed1g2801 587 Pfam Ring finger domain 336 380 IPR001841 -
Aed1g2801 587 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 10 587 - -
Aed1g2801 587 SUPERFAMILY RING/U-box 325 386 - -
Aed1g2801 587 CDD CUE_RIN3_plant 548 585 IPR035667 -
Aed1g2801 587 ProSiteProfiles CUE domain profile. 547 587 IPR003892 GO:0043130
Aed1g2801 587 Gene3D - 545 586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2801 Aed-Chr1 23223589 23231135 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2801 57 421 C3H Transcription Factor Family AT3G16090 27.665 6.40e-30 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2801 K10636 - gmx:100820578 1100.12