Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2754 ATGGCTTTCAAACCTCGCACGGTTGAAGAGATCTTCAAGGATTATAGCACTCGAAGAAGTGCTATTATTCGTGCTCACTCATGGTACTATTCTTCTCTTTTCAACTCTTCTCTCGATTTTCATCCTTTGCTTCTTCAAGTTCTTCATTTTCGTGCCTTCTTTTTCTCAGATGTTGATAAACTTTACAAGCTCTGTGATCCAGGAAAGGATAACTTGTGTCTCTATGGATATCCAAATAAGGCTTGGGAAGTAACTTTGCCATCAGAGGAAGTTCCACCAGAGCTCCCTGAGCCAACTATTGGAATCAATTTTGCTAGGGATGATGTTAGCTACAAGCATTGGATTTCATTGGTTGCTGTGCATAGTGATTCGTGGAAACGCTTATTTGGTTTGATCAACACTCTTCCTACCATTTTTCAAGTTGTGACTGACAATAAACATATTAAGAACAAGTCCACCAAGGTTAGTGTAGTTGCAGTTAAAAATCTGCATTTTCAAATAGTTTGTGGAAGTTGTAGTGGAAATTACAACAAAGATGAGTTTTGGATCAGCTGTGATATTTGTGGATGGTGGTACCACGGAAGATGCATTATGATGAACCCTAGAGAGGCTGAGACCATAAAGCACTATAAATGTGCATCATGCAGCTTGAGGAATGGCATGCTATAG 669 0.3946 MAFKPRTVEEIFKDYSTRRSAIIRAHSWYYSSLFNSSLDFHPLLLQVLHFRAFFFSDVDKLYKLCDPGKDNLCLYGYPNKAWEVTLPSEEVPPELPEPTIGINFARDDVSYKHWISLVAVHSDSWKRLFGLINTLPTIFQVVTDNKHIKNKSTKVSVVAVKNLHFQIVCGSCSGNYNKDEFWISCDICGWWYHGRCIMMNPREAETIKHYKCASCSLRNGML 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2754 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 166 216 IPR013083 -
Aed1g2754 222 SMART PHD_3 168 216 IPR001965 -
Aed1g2754 222 Pfam PHD-finger 169 216 IPR019787 -
Aed1g2754 222 Pfam Alfin 55 125 IPR021998 GO:0006355|GO:0042393
Aed1g2754 222 SUPERFAMILY FYVE/PHD zinc finger 164 219 IPR011011 -
Aed1g2754 222 PANTHER CPG BINDING PROTEIN 126 216 IPR045104 GO:0006355|GO:0042393
Aed1g2754 222 PANTHER CPG BINDING PROTEIN 2 125 IPR045104 GO:0006355|GO:0042393
Aed1g2754 222 ProSitePatterns Zinc finger PHD-type signature. 169 215 IPR019786 -
Aed1g2754 222 ProSiteProfiles Zinc finger PHD-type profile. 166 218 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2754 Aed-Chr1 22838543 22840936 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2754 5 220 Alfin-like Transcription Factor Family AT5G05610 45.385 2.08e-60 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aed1g2754 Alfin 6.3e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2754 - - gmx:100784077 294.278