Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2747 ATGGCGATGCGCGACCTCGTTTCCGGCGCCGCCGCATGCGGCGACTCTTCTTCTTCCTCCGCAAACCCTCTCGCTTCTCTCGCCAACGCCCTTGTTGGCTCTTCCTCCAAAACTCAGGAGAGGCTGAAGGAGATTCCCACATCCACTCCTACTGACCCTGCATCCCAATTTTACTCCACAGCTCTGCCCCCTAATTATCTTCCTGGTTCTGAACTCGATAAGCCTCTATTGAGTGCAAACTCTCAGGCTTCAGAGTTTTTGCATAGGTTCCGTGGCACCACTGGGCTTGAGGAGACGTGGGATGAGATACAGCGTGATGGGGCGGCTGCCCAAATGCGCCAACTGCCACCGGGGATTCAACAGCCGCTGCCGCCGATGGATGGGACACCACAAAGAGTTCTATCAAGCTTTTTGCACTCGTTTCTTGATAGCAGCCGTGGTGGAGTGCCTTTTCATCCTGCCCCTCTTCCGATGTTGGGTTTATCTGAAGGTGATAAACAATGCATACGTGACCGCAGCAGCATAATGGCCAGGCATCTTTTTGCGGATAAAAGTGAAGAATTTATTGATGCCCAAGTAAATGCGCTTCTATGCTCTCTAGATATTGACAGCAGTGTCCGTGGTAAGGGACCTATGACTGAAAGATATCGGGAGCTTGAGGATTACTGGAATGAGTCTCAAGGCAACCTGAGACTTGGTCCTCCTGCTGCAGACGGGTGGATTTCTGAATTTAGTCAACATAGGGAAAAATATGATAATCCTGATTCATGGGCTAACTCATTTGAGCAACAGCATGGCGCAAATGGTTGGGTGTCTGAATTTGAACATTCCCAATTGTCATCAGTAGATCAAATGCGAGGTATGAACATGCCAAACTTTGCTGCAATGGAGCAGACTCGTATGCTTGCAAACACGTTGGCCCAAAATGGTGACCCTAAATTTCAGAACTCAAAGTTCCTTCAATTTGTATCAAAGATGAGCCGTGGTGAGTTGATTATTGATGACAATCAAGTAAAAGAGAATGCATTACCTGCATCTGGAGATTGGGCAACAGAATACAATCAGCAATATAATCATAGTCATGCATGGGCTGGAGAATTTTTAAATGATAAGGTTTATCATGGACCTGATCAGTGGGCGAATGAATTTACAAGTGATGGACGGCAGCATGATGCAGTTGATGATCAGTGGGTTAATGAATTCTCAAAGTTGAATGTTAATGATTGGGCAGATGAATTTGGTCAGCAGTTAGGTGAAGGAGCCTTAGGGAATAGCACTTCTGATAGTTGGGCAAATGCATATGATGAGTTCCTAAATGAGCAAGTTGCTTCCAAGCAGCAGTTAGACAATTCGAGGGGTGTGTATGTCTTTTCAGATTTAAATCCCTATGTTGGTCATCCAAATCCGCTAAAGGAAGGCCAAGATCTATTCAGAAAAGGACTTTTAAGTGAAGCAGTTCTAGCATTGGAAGCTGAAGTCCTAAAAAACCCTGAGAATGCTGAAGGGTGGAGGCTGCTTGGAATAGCACATGCAGAGAATGATGATGATCAACAGGCTATTGCAGCAATGATGCGTGCACAGGAGGCTGACCCAACAAACCTGGAAGTGCTTCTTGCTCTTGGTGTTAGTCATACAAATGAGCTGGAGCAAACAGCTGCTCTGAAGTATCTATATGGATGGATGCGTCATCACCCAAAATATGGAACACTTGCCCCGCCTGAGATGGCTGATTCTTTGTACTATGCTGATGTTGCTAGGTTATTCAATGAAGCAGCTGAACTCTCACCTGATGATGCAGATGTCCACATCGTTCTAGGGGTCATGTACAACTTATCTAGAGAATATGAAAAAGCCATTGCATCTTTTGAAAGAGCACTGAAACTTAAGCCGCACGATTACTCTCTATGGAACAAGCTGGGTGCAACACAAGCAAACAGTGTTCAAAGTGCTGATGCAATAATGGCTTATCAACAGGCACTGGATTTAAAGCCTAATTATGTTCGTGCTTGGGCAAATATGGGTATCAGTTATGCAAATCAGGGTATGTATGACGAGTCCATTCGTTATTATGTTCGAGCACTTGCCATGAATCCAAAAGCCGATAATGCATGGCAATATTTGAGAATTTCATTGAGTGGAGATGGTTGCTTGAACATGAATCCTAATTTCCCTTAA 2175 0.4501 MAMRDLVSGAAACGDSSSSSANPLASLANALVGSSSKTQERLKEIPTSTPTDPASQFYSTALPPNYLPGSELDKPLLSANSQASEFLHRFRGTTGLEETWDEIQRDGAAAQMRQLPPGIQQPLPPMDGTPQRVLSSFLHSFLDSSRGGVPFHPAPLPMLGLSEGDKQCIRDRSSIMARHLFADKSEEFIDAQVNALLCSLDIDSSVRGKGPMTERYRELEDYWNESQGNLRLGPPAADGWISEFSQHREKYDNPDSWANSFEQQHGANGWVSEFEHSQLSSVDQMRGMNMPNFAAMEQTRMLANTLAQNGDPKFQNSKFLQFVSKMSRGELIIDDNQVKENALPASGDWATEYNQQYNHSHAWAGEFLNDKVYHGPDQWANEFTSDGRQHDAVDDQWVNEFSKLNVNDWADEFGQQLGEGALGNSTSDSWANAYDEFLNEQVASKQQLDNSRGVYVFSDLNPYVGHPNPLKEGQDLFRKGLLSEAVLALEAEVLKNPENAEGWRLLGIAHAENDDDQQAIAAMMRAQEADPTNLEVLLALGVSHTNELEQTAALKYLYGWMRHHPKYGTLAPPEMADSLYYADVARLFNEAAELSPDDADVHIVLGVMYNLSREYEKAIASFERALKLKPHDYSLWNKLGATQANSVQSADAIMAYQQALDLKPNYVRAWANMGISYANQGMYDESIRYYVRALAMNPKADNAWQYLRISLSGDGCLNMNPNFP 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2747 724 SUPERFAMILY TPR-like 450 712 IPR011990 GO:0005515
Aed1g2747 724 ProSiteProfiles TPR repeat region circular profile. 599 632 - -
Aed1g2747 724 MobiDBLite consensus disorder prediction 33 62 - -
Aed1g2747 724 Pfam Tetratricopeptide repeat 470 532 - -
Aed1g2747 724 PANTHER BNAC09G53570D PROTEIN 1 712 - -
Aed1g2747 724 ProSiteProfiles TPR repeat profile. 633 666 IPR019734 GO:0005515
Aed1g2747 724 Gene3D Tetratricopeptide repeat domain 447 718 IPR011990 GO:0005515
Aed1g2747 724 ProSiteProfiles TPR repeat profile. 599 632 IPR019734 GO:0005515
Aed1g2747 724 ProSiteProfiles TPR repeat profile. 667 700 IPR019734 GO:0005515
Aed1g2747 724 SMART tpr_5 633 666 IPR019734 GO:0005515
Aed1g2747 724 SMART tpr_5 500 533 IPR019734 GO:0005515
Aed1g2747 724 SMART tpr_5 667 700 IPR019734 GO:0005515
Aed1g2747 724 SMART tpr_5 599 632 IPR019734 GO:0005515
Aed1g2747 724 Pfam Tetratricopeptide repeat 668 699 IPR001440 GO:0005515
Aed1g2747 724 Pfam Tetratricopeptide repeat 599 632 IPR001440 GO:0005515
Aed1g2747 724 ProSiteProfiles TPR repeat profile. 500 533 IPR019734 GO:0005515
Aed1g2747 724 PANTHER PEROXISOMAL TARGETING SIGNAL 1 RECEPTOR PEX5 1 712 IPR024111 -
Aed1g2747 724 ProSiteProfiles TPR repeat region circular profile. 667 699 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2747 612 724 Glycosyltransferase AT3G04240 31.452 4.19e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2747 K13342 - gmx:100789878 1350.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2747 1 22771969 22782688 Aed1g2747 1 22771969 22782688 ECH