Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2731 ATGAATGTGACAAATAAGCCAAACCCAGATGGTTCCACCAATGGGTTTCAGTTTCAGTCTCAGCTTCAACAAAATGAGTGGGAGCAGGGATCATCTGTGCTCAGACCCACTAAACCTTACCCTGCACCAACGGCTCGCTACCAGGACATTGTTCATGATGCAAACCTCTTCTGGGGAACGCTTCAAGCTTTTCACAAAGCACTTGGCACCAAATATAAGGTTGCTACTGTGGGAGGAAAGTCGCTTGATCTACATCGCCTTTTTGTAGAAGTTACATCTCGTGGTGGGATTGAAAAGGTGATTGTTGATCGTAGGTGGAAGGAAGTGATTCTGACCTTCAATTTCAAAGATACCATAACAAGTGCATCATTTGTGGTGCGCAAATCCTATCTATCGATGCTTTATCACTTTGAGCAAGTAGGCCAATCAGGCCAACCCTATAGCTCCACAACCATTCCGGAAGCTCCTGCTGTGAATGATTCACCTGTTCAGAGTACTCCAGTACAGGCACATGATGCTATGGTTTCTGGAACAATTGATGCGAAATTTGATGGTGGATATGTAGTTACAGTGACTCTTGGTTCTGATCAGTTGAAAGGTGTCCTGTTTCATATTCCTGATAACATGTCCCAGAGTTCTCATACCGAAGGCACATCTAGCTCACAGAATCATGGTGAGGGCACGTCTAATGCACAGAGTCGAAAGAGAGCAAAATATGCACCGCGTGATCCATTTCGGCCAAAGTCAAACAGGAGCGGTTACAACTTTTTCTTTGCTGAGAATTATGCCATGCTGAAGCCCTCTTATCATGGACAAGAGAGAGCAATTAGTAAGAGGATTGGGTTTCTGTGGAACAATCTGTCAGAAGCAGAAAGACAGGTTTATCAAGAGAAAGGGATGAGAGATAAGGAAAGATACAGGACTGAACTGATGGAGTATAAATCCAACAATTCAACTCCAAATGCTCAATAG 972 0.4383 MNVTNKPNPDGSTNGFQFQSQLQQNEWEQGSSVLRPTKPYPAPTARYQDIVHDANLFWGTLQAFHKALGTKYKVATVGGKSLDLHRLFVEVTSRGGIEKVIVDRRWKEVILTFNFKDTITSASFVVRKSYLSMLYHFEQVGQSGQPYSSTTIPEAPAVNDSPVQSTPVQAHDAMVSGTIDAKFDGGYVVTVTLGSDQLKGVLFHIPDNMSQSSHTEGTSSSQNHGEGTSNAQSRKRAKYAPRDPFRPKSNRSGYNFFFAENYAMLKPSYHGQERAISKRIGFLWNNLSEAERQVYQEKGMRDKERYRTELMEYKSNNSTPNAQ 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2731 323 MobiDBLite consensus disorder prediction 209 235 - -
Aed1g2731 323 SMART hmgende2 246 315 IPR009071 -
Aed1g2731 323 MobiDBLite consensus disorder prediction 209 247 - -
Aed1g2731 323 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 247 314 IPR009071 -
Aed1g2731 323 ProSiteProfiles ARID domain profile. 51 142 IPR001606 GO:0003677
Aed1g2731 323 Pfam ARID/BRIGHT DNA binding domain 55 138 IPR001606 GO:0003677
Aed1g2731 323 PANTHER HIGH MOBILITY GROUP B PROTEIN 10-RELATED 24 322 - -
Aed1g2731 323 SUPERFAMILY HMG-box 246 317 IPR036910 -
Aed1g2731 323 SMART bright_3 52 143 IPR001606 GO:0003677
Aed1g2731 323 Gene3D High mobility group box domain 229 322 IPR036910 -
Aed1g2731 323 SUPERFAMILY ARID-like 50 144 IPR036431 GO:0003677
Aed1g2731 323 CDD HMGB-UBF_HMG-box 247 310 - -
Aed1g2731 323 Gene3D - 44 152 IPR036431 GO:0003677
Aed1g2731 323 CDD ARID_HMGB9-like 53 138 IPR045303 GO:0003677
Aed1g2731 323 Pfam HMG (high mobility group) box 247 314 IPR009071 -
Aed1g2731 323 SMART ARID_2 48 138 - -
Aed1g2731 323 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 24 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2731 Aed-Chr1 22628338 22632791 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2731 45 319 ARID Transcription Factor Family AT3G13350 52.650 1.05e-94 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Aed1g2731 ARID 4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2731 - - gmx:100793029 592.423