Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2730 ATGCTATCAAAGGAAGTTCCATCAGAGTTCCCTCATCCAGCTTTTGCAATCAATCTTGTTAGGGATGAGATGAGCCGTAGTGATTGGATTTCTATGGTTGCTGGGCATAGTGATTCGTGGTTACTTTCTGTGGCCCCTTTTGCCTTGCAACTCGTAGTTGCAGTTGAAAATGAGCACATTCAATTAGATTGTGGAAGTTGTGGTGGAAATTACAACAAAGATGAATTTTGGATTGGCTGTGATGTTTGCGAGAGGTGGTACCATGGGAAATGTGTTATGATGAACCCTATAGAGGCTGAGGCCCTAAAACATTATGAATGTGCATTATGCAGCAACAATAGGAGAGGCATGCCCTACACTGAAGCCAATGGAATGAAGATTATGCAAGGTGAGTGTTATTTTGTGGCAGATGAGAGATTGCAAGATATTGTAATATTGTTAATTACATCACTTATAAAAGTGCATGCAGTGGCATAA 477 0.4067 MLSKEVPSEFPHPAFAINLVRDEMSRSDWISMVAGHSDSWLLSVAPFALQLVVAVENEHIQLDCGSCGGNYNKDEFWIGCDVCERWYHGKCVMMNPIEAEALKHYECALCSNNRRGMPYTEANGMKIMQGECYFVADERLQDIVILLITSLIKVHAVA 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2730 158 CDD PHD_AL_plant 64 113 IPR044104 -
Aed1g2730 158 Pfam PHD-finger 64 112 IPR019787 -
Aed1g2730 158 PANTHER CPG BINDING PROTEIN 4 49 IPR045104 GO:0006355|GO:0042393
Aed1g2730 158 PANTHER CPG BINDING PROTEIN 56 114 IPR045104 GO:0006355|GO:0042393
Aed1g2730 158 Pfam Alfin 3 48 IPR021998 GO:0006355|GO:0042393
Aed1g2730 158 ProSitePatterns Zinc finger PHD-type signature. 64 110 IPR019786 -
Aed1g2730 158 ProSiteProfiles Zinc finger PHD-type profile. 61 113 IPR019787 -
Aed1g2730 158 SUPERFAMILY FYVE/PHD zinc finger 61 116 IPR011011 -
Aed1g2730 158 SMART PHD_3 63 111 IPR001965 -
Aed1g2730 158 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 111 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2730 Aed-Chr1 22609888 22611121 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2730 15 47 Alfin-like Transcription Factor Family AT5G05610 57.576 4.43e-07 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aed1g2730 PHD 1.2e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2730 - - gmx:100784077 155.221