Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2722 ATGGATCTTGTAAGCAGAAGATACTTGATTTATGCAACACAACATGTGTCACAATCGCAACCACAACAAGCACTTCCACCAATCACAAGTCCAGGGAGTTCTTCAATCTTTCACCCTCATCAGCATTCTTCTAGCACCAGTTTTCCCATCATTGCAATTGCCATTATAGGAATAATGGCCACGGCTTTCTTGCTTGTGAGCTACTACATCTTTGTGATCAAATGCTGCCTCAACTGGCACAGAATTGATGTTCTGAGACGTTTCTCTCCTTCCAGAAGACGTGAAGATCCATCACCAACATACTCACCAGGCACAGATACTCGTGGACTAGATGAAGCACTGATCCGGTTAATCCCAGTGATTCAATACAAAGCACAACAAGGAGAGAGAAGATTCTGTGAATGTGCTGTTTGCTTGAATGAGTTTCAAGAAGATGAGAAGCTGAGGATTATACCAAACTGCAGCCATGTGTTTCACATTGATTGCATAGATGTTTGGCTTCAGAGCAATGCCAATTGCCCTCTTTGTAGAACAAGCATTTCCTTGACAAGCAGGTTCCAAATTGATCAGCTTCTCACACTAAGGCCTTCTTCTTCTTCCCCTCCTAGGGAAAACCTCATTGGAGGTGATGAAGATTTTGTTGTCATTGAATTGGGTAATGATCATGAAAGAAGCCCAATTTTGCATGAAAGAGGCAGTGTTTGTGCTTTGGAGTTACCATTACCAACATGTCTTATTAGTCCTTCTGAACATGGAAATGTGCAGCAGAAGAAGAAAGCAATGAAACGTCAGAAAGTGATGACAAGCATGGGGGATGAGTGTATTGATATTAGAGCCAAAGATGAACAGTTCTCAGTGCAACCAATAAGGAGGTCTTTCTCCATGGACTCATCAGGGGATAGACAGTTCTATTTAGCAGTTCAAGAAGCTCTGAGGCTGCAGAGCAGGCAAGTCAATGAAGTCAACTCCATTGAAGGGTGCAGTGGTAGTGGTAGAGCCAAAAAATCATTCTTTTCCTTTGGACATGGAAGAAGTAGATCCAGAAGTTCTGTGCAACCTGTTTCTTTGGACCCCTGA 1077 0.4271 MDLVSRRYLIYATQHVSQSQPQQALPPITSPGSSSIFHPHQHSSSTSFPIIAIAIIGIMATAFLLVSYYIFVIKCCLNWHRIDVLRRFSPSRRREDPSPTYSPGTDTRGLDEALIRLIPVIQYKAQQGERRFCECAVCLNEFQEDEKLRIIPNCSHVFHIDCIDVWLQSNANCPLCRTSISLTSRFQIDQLLTLRPSSSSPPRENLIGGDEDFVVIELGNDHERSPILHERGSVCALELPLPTCLISPSEHGNVQQKKKAMKRQKVMTSMGDECIDIRAKDEQFSVQPIRRSFSMDSSGDRQFYLAVQEALRLQSRQVNEVNSIEGCSGSGRAKKSFFSFGHGRSRSRSSVQPVSLDP 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2722 358 MobiDBLite consensus disorder prediction 338 358 - -
Aed1g2722 358 Pfam Ring finger domain 134 177 IPR001841 -
Aed1g2722 358 CDD RING-H2_PA-TM-RING 134 177 - -
Aed1g2722 358 SUPERFAMILY RING/U-box 134 183 - -
Aed1g2722 358 PANTHER RING-H2 FINGER PROTEIN ATL16 27 357 IPR044600 GO:0016567|GO:0016740
Aed1g2722 358 SMART ring_2 135 176 IPR001841 -
Aed1g2722 358 ProSiteProfiles Zinc finger RING-type profile. 135 177 IPR001841 -
Aed1g2722 358 PANTHER RING-H2 FINGER PROTEIN ATL16 27 357 - -
Aed1g2722 358 MobiDBLite consensus disorder prediction 342 358 - -
Aed1g2722 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 185 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2722 Aed-Chr1 22523510 22524586 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2722 39 358 C3H Transcription Factor Family AT1G04360 52.089 1.15e-99 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2722 - - gmx:100775286 551.206