Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2710 ATGTTAATTGCAACTCTGGCAAATCCTTGGTGGACAGGTCAGGGAGGGTTATCTGGGGTTGACCCAGGAACCCATTCACCTGGCCTAACGAAACGCCACACAGACCTCGGAATCAACGAAAACAGTGGTGGGCACAGTAGAGAAGACGATGAAGACAACAGAGATGAACCTAGAGAGGGTGCAGTTGAGGTTGGAACCCGAAGACCAAGAGGAAGACCTCCTGGATCCAAAAACAAGCCAAAACCACCCATATTCGTGACAAGGGACAGCCCAAATGCCCTGAGGAGCCACGTGATGGAGATAACTGGTGGAGCTGATGTTGCAGAAAGTGTTGCCCAATTCGCAAGGAGGCGTCAGCGTGGGGTTTGTGTGCTCAGTGGGAGTGGCTCGGTGGCCAATGTTACTCTTAGACAGCCTTCTGCTCCTGGTGCTGTGGTGGCACTTCATGGAAGGTTTGAGATTCTATCCCTTACTGGGACTTTTCTACCTGGCCCTGCGCCTCCAGGATCCACGGGACTAACTGTGTATCTGGCTGGAGGGCAAGGCCAGGTAGTTGGAGGAAGTGTGGTTGGATCTCTAGTTGCAACAGGACCAGTAATGGTCATTGCTGCAACTTTTGCTAATGCAACCTATGAGAGACTTCCACTTGATGAAGATGATGAGGGGCCTAGTTCGGCAGTGGGGGCACAAGGTGGCGGAGGATCATCGCCACCGCTGCCACCGCTTGGAATTGGAAGCAGTGGGGGTGGTGGACAGTTGCAGGGTGGGATTCCAGATCCATCATCTCTGCCTTTGTATAATCTTCCACCAAATGGAGGAGGGGGCCATAACCAGGTGGGGCATGAAGCTCTTGCTTGGGCTCATGGACGAGCACCTTTCTGA 882 0.5317 MLIATLANPWWTGQGGLSGVDPGTHSPGLTKRHTDLGINENSGGHSREDDEDNRDEPREGAVEVGTRRPRGRPPGSKNKPKPPIFVTRDSPNALRSHVMEITGGADVAESVAQFARRRQRGVCVLSGSGSVANVTLRQPSAPGAVVALHGRFEILSLTGTFLPGPAPPGSTGLTVYLAGGQGQVVGGSVVGSLVATGPVMVIAATFANATYERLPLDEDDEGPSSAVGAQGGGGSSPPLPPLGIGSSGGGGQLQGGIPDPSSLPLYNLPPNGGGGHNQVGHEALAWAHGRAPF 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2710 293 PIRSF ESCAROLA 21 293 IPR014476 GO:0003680
Aed1g2710 293 MobiDBLite consensus disorder prediction 215 279 - -
Aed1g2710 293 Pfam Plants and Prokaryotes Conserved (PCC) domain 95 207 IPR005175 -
Aed1g2710 293 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 39 293 IPR014476 GO:0003680
Aed1g2710 293 ProSiteProfiles PPC domain profile profile. 91 228 IPR005175 -
Aed1g2710 293 CDD DUF296 95 178 IPR005175 -
Aed1g2710 293 MobiDBLite consensus disorder prediction 7 91 - -
Aed1g2710 293 SUPERFAMILY AF0104/ALDC/Ptd012-like 91 219 - -
Aed1g2710 293 MobiDBLite consensus disorder prediction 42 66 - -
Aed1g2710 293 Gene3D - 94 221 - -
Aed1g2710 293 PANTHER DNA-BINDING PROTEIN-LIKE 39 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2710 Aed-Chr1 22455218 22456171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2710 6 293 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 61.589 6.21e-99 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2710 - - var:108341460 432.18