Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2709 ATGTTAAAAGCAGTGGCATCTGGGCTGTTGATTACCTCTATCTTCATATGTGTATCTGCAAATGATAGTGGATTTCCTAGATGTAACTGTGATGATGAGGCCAGCTTGTGGACTATTGAAAGCATTCTGGAGTGTCAGAGAGTTGGTGATTTCTTGATTGCTGTGGCCTACTTCTCTATCCCTATTGAGCTGCTTTATTTTATCAGTTGCTCAAACGTCCCATTCAAATGGGTCCTGATTCAGTTCATTGCCTTCATTGTACTATGTGGATTGACACATTTGCTCAACGGGTGGACCTATGGCCCTCACACTTTCCAACTTATGGTGGCACTTACTGTCTCCAAAATACTCACTGCATTGGTGTCATGTGCCACTGCCATAACCCTCATTACTCTGATTCCTTTGCTTCTCAAAGTGAAGGTCAGAGAATTCATGCTGAAGAAAAAGACATGGGATCTTGGACGCGAGGTTGATCATATTATGAGACAAAAGGAGGCTGCAATGCATGTAAGAATGCTCACGCAGGAGATACGCAAGTCACTCGATAGACATACGATTCTGTATACCACTTTGGTGGAGCTGTCTAAAACACTTGGCTTGCAAAATTGTGCTGTGTGGATGCCTAATGTTGATAAGACTGAGATGAACCTCACTCATGAGTTGAATGGGAGGAATTTCAATTTGACTATACCCATTACTGATCCAGATGTTGTGAGCATTAAGGGAAGTGATGATGTAAATATACTCAGCTCCGACTCAGCACTTGCTGTTGGGAGTAGTGGATCTTCTGGAGAGTCTGGACCAGTTGCAGCAATCCGAATGCCAATGCTACGGGTTTGTAATTTCAAAGGAGGAACACCAGAGCTAAGACAGGCTTGTTATGCAATATTGGTCTTAATTCTTCCTACTGGAGAGCCTAGATCTTGGAGCAATCAGGAGCTGGAGATAATTAAGGTGGTTGCTGATCAGGTCGCAGTGGCTCTATCTCATGCTGCAATTCTTGAAGAGTCCCAACTTATGAGAGAGAAGTTGGAGGAGCAAAATCGAGCTTTGCAACTGGCGAGAAGGAATGCTATGATGGCAAGCCAGGCAAGAGCTGCATTTCAGAAAGTCATGAGTGATGGAATGAGGAGGCCAATGCACTCAATTCTGGGATTGCTTTCGATGGTACAAGATGATAATTTAAAGAATGAACAGAAACTTATTGTGGATGCAATGCTGAGAACCAGCAATGTCCTATCAAACTTGATAAATGATGCAATGGACAACTCAACTAAGGATGATGGAAGATTTCCTTTGGAGATAAGGTCTTTTGGGTTGCATTCCTTGCTGAAGGAAGCAGCTTGCCTTTCCAAGTGCATGTGTGTTTATAGAGGCTTTGGTTTTATGGTTGAGGTTGAGAAGTCTTTGCCCGACAATGTTATGGGTGATGAGAGGAGGGTTTTTCAGGTGATTTTGCATATGGTTGGGAACCTACTGGAGCACAACCATGGGGGAGGGATCCTTGTATTTCGAGTTTTTGCAGAAACTGGAAGTCAGGGAAGGAGTGACAAAGGGTGGACAACCTGGAGACCAAGCTCTTCTAATGGTGATGTAAATATTAGATTTGAGATAGGGATCAACAGTAGCGATTCTGAAGTCGGGAGCTCAGTTTCATCTGGACTTGGGGGTAGGAAATATAGCAGTGATAGGGTTGGGGGCAGATTGAGCTTCAGCATTTGCAAGAAGATAGTCCAGTTGATGCAGGGGAACATATGGTTAGTACCTTGTAATCATGGTTATCCTCAAAGCATGACACTTCTTCTCCGGTTTCAATTACGACCATCCATTGCCATAGCCATCTCTGAACCCGGAGAAGGTTCAGAACGCAGCAGTGATTCCAATTCAATGCTGAGAAGTCTGCAAGTTCTTTTAGTGGACAATGATGATGTAAATAGAGCAGTGACACAAAGATTGCTTCAGAAACTAGGTTGTGTTGTAACTCCCATTGCTTCAGGATTTGAATGCCTTACTGTCATTGGACCTGCAGGATCTTCTGTTCAAGTCATTCTTTTAGATCTTCACATGCCTGATTTGGATGGCTTTGAGGTTGCCTCTAGGATTCGAAAGTTCAGAAGTGGAAATCGACCAATGATTGTTGCCTTGACTGCAAGTGCAGAAGAAGATTTGTGGGAAAGATGCATGCAAGTTGGTATTAATGGAGTTATCCGTAAGCCAGTTTTGTTGCAAGGAATTGCTAGTGAACTCAGAAGAATCCTGATGCAGCAGGGAAATAATAATGTCCTGTGA 2289 0.4329 MLKAVASGLLITSIFICVSANDSGFPRCNCDDEASLWTIESILECQRVGDFLIAVAYFSIPIELLYFISCSNVPFKWVLIQFIAFIVLCGLTHLLNGWTYGPHTFQLMVALTVSKILTALVSCATAITLITLIPLLLKVKVREFMLKKKTWDLGREVDHIMRQKEAAMHVRMLTQEIRKSLDRHTILYTTLVELSKTLGLQNCAVWMPNVDKTEMNLTHELNGRNFNLTIPITDPDVVSIKGSDDVNILSSDSALAVGSSGSSGESGPVAAIRMPMLRVCNFKGGTPELRQACYAILVLILPTGEPRSWSNQELEIIKVVADQVAVALSHAAILEESQLMREKLEEQNRALQLARRNAMMASQARAAFQKVMSDGMRRPMHSILGLLSMVQDDNLKNEQKLIVDAMLRTSNVLSNLINDAMDNSTKDDGRFPLEIRSFGLHSLLKEAACLSKCMCVYRGFGFMVEVEKSLPDNVMGDERRVFQVILHMVGNLLEHNHGGGILVFRVFAETGSQGRSDKGWTTWRPSSSNGDVNIRFEIGINSSDSEVGSSVSSGLGGRKYSSDRVGGRLSFSICKKIVQLMQGNIWLVPCNHGYPQSMTLLLRFQLRPSIAIAISEPGEGSERSSDSNSMLRSLQVLLVDNDDVNRAVTQRLLQKLGCVVTPIASGFECLTVIGPAGSSVQVILLDLHMPDLDGFEVASRIRKFRSGNRPMIVALTASAEEDLWERCMQVGINGVIRKPVLLQGIASELRRILMQQGNNNVL 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2709 762 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 349 430 IPR036097 GO:0000155|GO:0007165
Aed1g2709 762 SMART HisKA_10 364 429 IPR003661 GO:0000155|GO:0007165
Aed1g2709 762 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 11 756 - -
Aed1g2709 762 SUPERFAMILY CheY-like 632 753 IPR011006 -
Aed1g2709 762 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 476 603 IPR003594 -
Aed1g2709 762 SMART REC_2 634 753 IPR001789 GO:0000160
Aed1g2709 762 PIRSF Ethylen_sen_hybr_HK 1 760 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Aed1g2709 762 Gene3D - 161 329 IPR029016 -
Aed1g2709 762 PANTHER ETHYLENE RESPONSE SENSOR 2 11 756 - -
Aed1g2709 762 Gene3D - 330 427 - -
Aed1g2709 762 SMART gaf_1 182 338 IPR003018 GO:0005515
Aed1g2709 762 Pfam GAF domain 182 328 IPR003018 GO:0005515
Aed1g2709 762 CDD HisKA 362 424 IPR003661 GO:0000155|GO:0007165
Aed1g2709 762 Pfam His Kinase A (phospho-acceptor) domain 367 429 IPR003661 GO:0000155|GO:0007165
Aed1g2709 762 Pfam Response regulator receiver domain 636 743 IPR001789 GO:0000160
Aed1g2709 762 Coils Coil 334 364 - -
Aed1g2709 762 CDD REC_ETR-like 634 749 - -
Aed1g2709 762 Gene3D - 634 760 - -
Aed1g2709 762 ProSiteProfiles Response regulatory domain profile. 635 753 IPR001789 GO:0000160
Aed1g2709 762 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 433 590 IPR036890 -
Aed1g2709 762 Gene3D - 428 606 IPR036890 -
Aed1g2709 762 SUPERFAMILY GAF domain-like 185 331 - -
Aed1g2709 762 CDD HATPase_ETR2_ERS2-EIN4-like 470 602 - -
Aed1g2709 762 ProSiteProfiles Histidine kinase domain profile. 371 585 IPR005467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2709 Aed-Chr1 22441173 22445609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2709 20 753 Miscellaneous Gene Families AT3G04580 57.718 0.0 828
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aed1g2709 GAF 1.3e-12 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2709 K14509 - gmx:100787425 1370.14