Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2697 ATGGATTCGGATCAAGGAAAGCTTTTCATCGGTGGGATTTCATGGGACACGACGGAGGACAAGCTCAAGGAGCATTTCGGTAACTACGGCGAAGTTTTGAGCACTTCCGTCATGCGGGAGAAGAACACTGGCAAGCCTAGGGGATTTGGTTTCGTCGTTTTTGCGGATCCTTCCATTCTAGATAGGGTTTTGGAAGACAAGCATGTCATAGATGGCAGAACGGTTGATGCCAAAAAGGCCTTCTCAAGAGAGGATCAACAAATTTCTGTCACTTCGAGAGGTGGAAATTCCAATTCTGGGATGAATTCTGGAAATGGAGGAAACATCAGGACTAAAAAGATATTTGTTGGAGGGTTGCCTCCCACCCTGACTGAAGAGAAGTTTCGTCAGTACTTTGAGTCTTATGGGCATGTAACTGATGTAGTAGTCATGTATGACCAGAATACTGGTCGGCCAAGAGGATTTGGGTTTATTTCATTTGATGCTGAGGAGGCGGTTGATAGGGTTTTGCACAAATCATTTCATGATTTAAATGGTAAACAAGTTGAGGTAAAGCGTGCGCTTCCTAAGGATGCAAATCCTGGTGCAAGTGGCCGAATGATGGGTGGTGCTGGAGGTGGTGGTGCTGGAATGGGTGGGTATCAAGGGTATGGGGCATCTAGTGGCAACCAAAATGCATATGATGGTCGTATGGATTCTAGTAGGTACATGCAGCCTCAGAGTGCTGCAGGTGGATTCCCTGCTTATGGTTCTTCTGCCTACAGTGCTCCTGGGTATGGATATGGTCCAGCTAATAATGGCATTGGCTACAGTGCGTATGGAAGTTATGGTGGTGCCACTGCTGGGTATGGTGGACCTGCTGGTGCAACATATGGGAATCCTAATGTCCCTAATGCTGCTTATCCTGGTGGTCCACCAGGTGGCCCAAGGAGTTCATGGCCTGCTCAGGCTCCTTCTGGTTATGGATCTATGGGCTATGGGAACACTGCTCCTTGGAGTGCTGCAACTGCTGGATCTGGTGGTGGCGGTTCTGCTGCAGCAGCAGCAGGTCAGTCCCCTGGTGGAGCTGCTGGATATGGGAATCAAGGTTATGGATATGGTGGGTATGGTGGATATGGTGGAAGTGATAGTTCTTATGGGAATTCAAGTGCGTATGGTACTGTTGGTGGACGTTCTGGGAGTGCTCCAAACAGTAATGCTAGTGCTCCTGGTGGTAGTGAACTAACAAGTAGTGGTGGCAGTGGCAACTATATGGGTGGTGGCTATGGGGATGCAAATGGAAATTCAGGTTATGGAAATGCAGCTTGGAGATCTGAACAAACTCATGCATCTGGAAATTATGGAACTCCTCAGGGAAATGGTGGGCAAGTTGGTTATGGTGGTGGCTACGGTGGTGCTCAGTCTCGACAAGCCCAACAGCAGTAA 1425 0.4849 MDSDQGKLFIGGISWDTTEDKLKEHFGNYGEVLSTSVMREKNTGKPRGFGFVVFADPSILDRVLEDKHVIDGRTVDAKKAFSREDQQISVTSRGGNSNSGMNSGNGGNIRTKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDAEEAVDRVLHKSFHDLNGKQVEVKRALPKDANPGASGRMMGGAGGGGAGMGGYQGYGASSGNQNAYDGRMDSSRYMQPQSAAGGFPAYGSSAYSAPGYGYGPANNGIGYSAYGSYGGATAGYGGPAGATYGNPNVPNAAYPGGPPGGPRSSWPAQAPSGYGSMGYGNTAPWSAATAGSGGGGSAAAAAGQSPGGAAGYGNQGYGYGGYGGYGGSDSSYGNSSAYGTVGGRSGSAPNSNASAPGGSELTSSGGSGNYMGGGYGDANGNSGYGNAAWRSEQTHASGNYGTPQGNGGQVGYGGGYGGAQSRQAQQQ 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2697 474 SMART rrm1_1 7 78 IPR000504 GO:0003723
Aed1g2697 474 SMART rrm1_1 113 185 IPR000504 GO:0003723
Aed1g2697 474 MobiDBLite consensus disorder prediction 388 474 - -
Aed1g2697 474 SUPERFAMILY RNA-binding domain, RBD 111 217 IPR035979 GO:0003676
Aed1g2697 474 Gene3D - 4 88 IPR012677 -
Aed1g2697 474 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Aed1g2697 474 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Aed1g2697 474 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 180 IPR000504 GO:0003723
Aed1g2697 474 MobiDBLite consensus disorder prediction 431 453 - -
Aed1g2697 474 SUPERFAMILY RNA-binding domain, RBD 3 109 IPR035979 GO:0003676
Aed1g2697 474 MobiDBLite consensus disorder prediction 388 416 - -
Aed1g2697 474 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Aed1g2697 474 MobiDBLite consensus disorder prediction 84 107 - -
Aed1g2697 474 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Aed1g2697 474 Gene3D - 107 229 IPR012677 -
Aed1g2697 474 CDD RRM2_DAZAP1 110 189 IPR034131 GO:0003723
Aed1g2697 474 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2697 Aed-Chr1 22344129 22348744 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2697 8 200 Eukaryotic Initiation Factors Gene Family AT2G23350 23.881 2.89e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2697 K14411 - gmx:100786882 620.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2697 1 22344129 22348744 Aed1g2697 1 22344129 22348744 ECH