Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2680 ATGTATTCGGAAGTGATGGCAGGTGGAAACATGGGGTGGAGTAAGGGTGTGATAGAATTAGAAGAGGAGGGATGGAGGAAGGGACCTTGGACTGCTCAGGAAGACAGATTGCTCATTCAGTATGTCAACTTGCATGGTGAAGGCAGATGGAACTCTGTTGCTACCCTTTCAGGACTGAAAAGAAATGGGAAGAGCTGCAGATTGAGATGGGTGAATTACCTGAGGCCAGACCTCAAGAAGGGTCAGATAACACCACAAGAAGAAAGCATCATTCAAGAGCTGCATGCTAGGTGGGGAAACAGGTGGTCAACAATTGCAAGAAGCTTGCCAGGAAGAACTGACAATGAGATAAAGAACTATTGGAGGACTCACTTCAAGAAAAAGACTAAACCCCCCTCTGATGCTGCTGAGAAGGCTAGAATCCGTTCCTCAAGGAAACAGCAATTTCAACAGCAGTTAAAGCAGCAGCAGCAACAACATGAATTCCAAATGAACTTGGACATGAAAGGGATCATTAACATGCTTGAGGAAAATGACCATAGAGTCCCTTCTACATCTCAAGAGGCACAAGAAATGGTGAACATGTACCACCCCAACATGACCATAGAACAGCAGGGTTACTTCTACTACTCTATGTTCAATGCCAATGACAATGTCTCTGCACCTGAGTCCTCAAATGAAGAAATTCTGTGGGATGAACTGTGGAACTTGGACGATGTTCTTTGCAATTTCAATGCAGCTAGTTTGCGCAATTTAGTTGCTCCTTTCTGTTAA 774 0.4432 MYSEVMAGGNMGWSKGVIELEEEGWRKGPWTAQEDRLLIQYVNLHGEGRWNSVATLSGLKRNGKSCRLRWVNYLRPDLKKGQITPQEESIIQELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKTKPPSDAAEKARIRSSRKQQFQQQLKQQQQQHEFQMNLDMKGIINMLEENDHRVPSTSQEAQEMVNMYHPNMTIEQQGYFYYSMFNANDNVSAPESSNEEILWDELWNLDDVLCNFNAASLRNLVAPFC 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2680 257 Gene3D - 27 79 - -
Aed1g2680 257 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 248 IPR044676 GO:0003700|GO:0006355|GO:0043565
Aed1g2680 257 PANTHER MYB TRANSCRIPTION FACTOR 1 248 - -
Aed1g2680 257 Coils Coil 146 166 - -
Aed1g2680 257 Pfam Myb-like DNA-binding domain 80 124 IPR001005 -
Aed1g2680 257 Pfam Myb-like DNA-binding domain 27 74 IPR001005 -
Aed1g2680 257 CDD SANT 84 125 IPR001005 -
Aed1g2680 257 ProSiteProfiles Myb-like domain profile. 75 125 IPR001005 -
Aed1g2680 257 ProSiteProfiles Myb-like domain profile. 22 74 IPR001005 -
Aed1g2680 257 SMART sant 79 127 IPR001005 -
Aed1g2680 257 SMART sant 26 76 IPR001005 -
Aed1g2680 257 Gene3D - 84 166 - -
Aed1g2680 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 129 IPR017930 -
Aed1g2680 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 26 78 IPR017930 -
Aed1g2680 257 CDD SANT 29 74 IPR001005 -
Aed1g2680 257 SUPERFAMILY Homeodomain-like 24 121 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2680 Aed-Chr1 22247053 22248288 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2680 20 257 MYB Transcription Factor Family AT4G13480 50.000 3.66e-80 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed1g2680 Myb_DNA-binding 1.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2680 K09422 - gmx:100813935 406.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2680 1 22247053 22248288 Aed1g2680 1 22247053 22248288 ECH