Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aed1g2676 | ATGGAGCAGGAAGAGCACGAAGTGTACGGTGCAGACATTCCCGACGAGGAGATTGATATGGACGCCGACGCAGACGCCGAACAACAAGACGAACAACTTGCCCCCAATCACACAACCAAGGAATTGGAGGACATGAAGAAGAGGCTGAAGGAGATCGAGGAGGAAGCTAGCGCCCTCCGCGAAATGCAGGCCAAGGTTGAGAAAGAGATGGGCGCTGTTCAAGATTCGTCTGGGACTTCTGCGACTCAGGCTGAGAAGGAGGAAGTGGATGCTCGGTCAATCTATGTTGGTAATGTTGACTATGCATGTACCCCTGAAGAAGTTCAACAGCATTTTCAGTCCTGTGGAACTGTGAACAGGGTGACAATACTGACAGACAAATTTGGTCAACCAAAAGGGTTTGCTTATGTAGAGTTTGTTGAGATTGATGCTGTGCAGAATGCTCTCCTGTTAAATGAATCAGAATTGCATGGTCGACAACTGAAGGTGTCTGCCAAGCGTACAAATGTTCCTGGAATGAAGCAGTATTATGGAAGAAGACCTACTGGTTTCCGATCTAGGAGGCCTTTCATGCCTGCTCCATTCTTTCCACCATATGGTTATGGAAGGGTTCCAAGGTATAGAAGACCCACTCGATACAGGCCATACTAG | 651 | 0.4808 | MEQEEHEVYGADIPDEEIDMDADADAEQQDEQLAPNHTTKELEDMKKRLKEIEEEASALREMQAKVEKEMGAVQDSSGTSATQAEKEEVDARSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYYGRRPTGFRSRRPFMPAPFFPPYGYGRVPRYRRPTRYRPY | 216 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aed1g2676 | 216 | Gene3D | - | 12 | 174 | IPR012677 | - | |
Aed1g2676 | 216 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 92 | 168 | IPR000504 | GO:0003723 | |
Aed1g2676 | 216 | SMART | rrm1_1 | 93 | 164 | IPR000504 | GO:0003723 | |
Aed1g2676 | 216 | MobiDBLite | consensus disorder prediction | 1 | 46 | - | - | |
Aed1g2676 | 216 | CDD | RRM_II_PABPs | 93 | 164 | - | - | |
Aed1g2676 | 216 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 94 | 162 | IPR000504 | GO:0003723 | |
Aed1g2676 | 216 | Coils | Coil | 42 | 69 | - | - | |
Aed1g2676 | 216 | SUPERFAMILY | RNA-binding domain, RBD | 82 | 189 | IPR035979 | GO:0003676 | |
Aed1g2676 | 216 | PANTHER | POLYADENYLATE-BINDING PROTEIN 1-LIKE | 3 | 215 | - | - | |
Aed1g2676 | 216 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H | 3 | 215 | - | - | |
Aed1g2676 | 216 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Aed1g2676 | 216 | MobiDBLite | consensus disorder prediction | 68 | 88 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aed1g2676 | Aed-Chr1 | 22230498 | 22234154 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Aed1g2676 | 93 | 164 | Eukaryotic Initiation Factors Gene Family | AT2G36660 | 38.158 | 4.16e-10 | 57.0 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aed1g2676 | K14396 | - | gmx:100527545 | 341.658 |