Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2676 ATGGAGCAGGAAGAGCACGAAGTGTACGGTGCAGACATTCCCGACGAGGAGATTGATATGGACGCCGACGCAGACGCCGAACAACAAGACGAACAACTTGCCCCCAATCACACAACCAAGGAATTGGAGGACATGAAGAAGAGGCTGAAGGAGATCGAGGAGGAAGCTAGCGCCCTCCGCGAAATGCAGGCCAAGGTTGAGAAAGAGATGGGCGCTGTTCAAGATTCGTCTGGGACTTCTGCGACTCAGGCTGAGAAGGAGGAAGTGGATGCTCGGTCAATCTATGTTGGTAATGTTGACTATGCATGTACCCCTGAAGAAGTTCAACAGCATTTTCAGTCCTGTGGAACTGTGAACAGGGTGACAATACTGACAGACAAATTTGGTCAACCAAAAGGGTTTGCTTATGTAGAGTTTGTTGAGATTGATGCTGTGCAGAATGCTCTCCTGTTAAATGAATCAGAATTGCATGGTCGACAACTGAAGGTGTCTGCCAAGCGTACAAATGTTCCTGGAATGAAGCAGTATTATGGAAGAAGACCTACTGGTTTCCGATCTAGGAGGCCTTTCATGCCTGCTCCATTCTTTCCACCATATGGTTATGGAAGGGTTCCAAGGTATAGAAGACCCACTCGATACAGGCCATACTAG 651 0.4808 MEQEEHEVYGADIPDEEIDMDADADAEQQDEQLAPNHTTKELEDMKKRLKEIEEEASALREMQAKVEKEMGAVQDSSGTSATQAEKEEVDARSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYYGRRPTGFRSRRPFMPAPFFPPYGYGRVPRYRRPTRYRPY 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2676 216 Gene3D - 12 174 IPR012677 -
Aed1g2676 216 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 168 IPR000504 GO:0003723
Aed1g2676 216 SMART rrm1_1 93 164 IPR000504 GO:0003723
Aed1g2676 216 MobiDBLite consensus disorder prediction 1 46 - -
Aed1g2676 216 CDD RRM_II_PABPs 93 164 - -
Aed1g2676 216 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 162 IPR000504 GO:0003723
Aed1g2676 216 Coils Coil 42 69 - -
Aed1g2676 216 SUPERFAMILY RNA-binding domain, RBD 82 189 IPR035979 GO:0003676
Aed1g2676 216 PANTHER POLYADENYLATE-BINDING PROTEIN 1-LIKE 3 215 - -
Aed1g2676 216 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 3 215 - -
Aed1g2676 216 MobiDBLite consensus disorder prediction 1 28 - -
Aed1g2676 216 MobiDBLite consensus disorder prediction 68 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2676 Aed-Chr1 22230498 22234154 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2676 93 164 Eukaryotic Initiation Factors Gene Family AT2G36660 38.158 4.16e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2676 K14396 - gmx:100527545 341.658