Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2671 ATGTCGGATGCACCAACGAGCCCGAGTCATGAGAGTGGGGGCGAGCAGAGTCCGCGCGGTTCGTCCTCCGGGGCGAGGGAGCAGGACCGGTACCTTCCCATCGCCAACATCAGCCGCATCATGAAGAAGGCTCTGCCTCCGAATGGCAAGATTGCGAAGGACGCCAAAGATACCATGCAAGAATGCGTTTCTGAATTCATCAGCTTCATTACCAGCGAAGCGAGTGAGAAATGCCAGAAAGAGAAGAGAAAGACAATCAATGGAGATGATTTGCTATGGGCGATGGCCACTTTAGGATTTGAAGACTATATAGAGCCGCTTAAGGTGTACCTGGCAAGGTACAGAGAGGGTGACACTAAGGGATCTGCTAGAAGTGGTGATGGATCTGCTAGAGCAGATCAAGTTGGTCTTGCAGGTCAAAATGCTCAGCTTGTTCATCAGGGTTCGCTGAACTATATTGGTTTACAGGTGCAGCCACAACATCTGGTTATGCCTTCAATGCAAAGCCATGAATAG 516 0.5039 MSDAPTSPSHESGGEQSPRGSSSGAREQDRYLPIANISRIMKKALPPNGKIAKDAKDTMQECVSEFISFITSEASEKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKVYLARYREGDTKGSARSGDGSARADQVGLAGQNAQLVHQGSLNYIGLQVQPQHLVMPSMQSHE 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2671 171 MobiDBLite consensus disorder prediction 1 24 - -
Aed1g2671 171 MobiDBLite consensus disorder prediction 1 30 - -
Aed1g2671 171 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 1 151 - -
Aed1g2671 171 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 151 IPR027113 GO:0001228|GO:0006355|GO:0016602
Aed1g2671 171 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
Aed1g2671 171 Gene3D Histone, subunit A 18 150 IPR009072 GO:0046982
Aed1g2671 171 SUPERFAMILY Histone-fold 28 126 IPR009072 GO:0046982
Aed1g2671 171 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Aed1g2671 171 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Aed1g2671 171 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Aed1g2671 171 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2671 Aed-Chr1 22178279 22182150 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2671 9 165 CCAAT-HAP3 Transcription Factor Family AT2G37060 71.875 4.05e-75 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Aed1g2671 CBFD_NFYB_HMF 8.5e-29 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2671 K08065 - gmx:100779577 330.102