Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2657 ATGGCAACAGGATCAAAGTTTTTGGACAATGCAATTATAAGAGGCCATTCTCATTCTCTCACTACCTCTAACCATGTTCATGTATTAAGAAGTGGGGCAAACTCATCATCAATAGCATCATCACCACCTGAAAAGCTTCTTTCATGTTCAAACTCTTCTTCAATGAAAGAAGATGCACCTTTAGCAACTTGGATTAGTCATATCCCTGCAAAGTTCAATAATGGCCATGAAGGCATGAAGAATGGCAAAGAGAAAAAAAACCAATCCAATTCTATCTTCCCAGCCTCAGACATAAAAAACAGCTCCACTCCTCTAAATCTTTTGGAAACTCTCCCTCCATTAAATATAGCACCATGTTTTGATGCTTCCCTAGCATCTTCTTCTGCCACACCAAATTTTCCAAACTTGACTTTGTTTTTGCAGGAATCCTCCATGATGTACTCATCATCATCATCATCCTCAAATATCAAAGGTGGTGAAGTCATCTCAGCCACTTCAGACCCCACATATTATGTGTCTCACTTTGTCCAAAACCAGCATCAAGCAGGTAGTGGTGATGCACACAACAAAATGAACAAGATCCTAACAAATTCGCGGTCCAAGTCTTTCAATGAGAATTGGTTGAGTGCCAATAGGACTACTCAGCCTATGAAGTATAATGGAAGAGGCAAGCTTTTTAAGGGTGTGAGGCAGAGACACTGGGGGAAATGGGTTGCTGAGATTAGATTACCAAGAAACAGGAAAAGGGTATGGCTAGGGACTTTTGACACAGCTGAAGAGGCTGCCATTGCATATGACACAGCAGCATACATACTAAGAGGAGAATATACTCAGTTGAACTTCCCAGATCTCAAGCATGTAATTCATGCCAATTCTCTTAATGGAACCACTGCAGCACTTGTGGAGGCAAAACTACAAGCAATATCACAAGGTGGTGGTTCTTCTCATCATAGGAAGCCAAGAGATGATTCACCACCAGCAGGGTCATCAAGCAATAATAAGCACAGTGATGATGAGAATGGAAAATTGAAAAGTATGAATGGGATTGGAGCTGAGATAACTGAGAGAAGCAAAAGTACACAAACACAGCATCATGAGATATCAGATGTGGAAGCTGTTCAGTTAAGTAGAATGCCCTCTTTAGACATGGACATCATTTGGGATGAACTTTTAGTCTCTAATTCATGA 1188 0.4066 MATGSKFLDNAIIRGHSHSLTTSNHVHVLRSGANSSSIASSPPEKLLSCSNSSSMKEDAPLATWISHIPAKFNNGHEGMKNGKEKKNQSNSIFPASDIKNSSTPLNLLETLPPLNIAPCFDASLASSSATPNFPNLTLFLQESSMMYSSSSSSSNIKGGEVISATSDPTYYVSHFVQNQHQAGSGDAHNKMNKILTNSRSKSFNENWLSANRTTQPMKYNGRGKLFKGVRQRHWGKWVAEIRLPRNRKRVWLGTFDTAEEAAIAYDTAAYILRGEYTQLNFPDLKHVIHANSLNGTTAALVEAKLQAISQGGGSSHHRKPRDDSPPAGSSSNNKHSDDENGKLKSMNGIGAEITERSKSTQTQHHEISDVEAVQLSRMPSLDMDIIWDELLVSNS 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2657 395 CDD AP2 224 284 IPR001471 GO:0003700|GO:0006355
Aed1g2657 395 Pfam AP2 domain 226 274 IPR001471 GO:0003700|GO:0006355
Aed1g2657 395 MobiDBLite consensus disorder prediction 74 96 - -
Aed1g2657 395 Gene3D AP2/ERF domain 225 283 IPR036955 GO:0003700|GO:0006355
Aed1g2657 395 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF062 2 394 - -
Aed1g2657 395 SMART rav1_2 225 288 IPR001471 GO:0003700|GO:0006355
Aed1g2657 395 MobiDBLite consensus disorder prediction 309 371 - -
Aed1g2657 395 PRINTS Ethylene responsive element binding protein signature 248 264 IPR001471 GO:0003700|GO:0006355
Aed1g2657 395 PRINTS Ethylene responsive element binding protein signature 226 237 IPR001471 GO:0003700|GO:0006355
Aed1g2657 395 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 2 394 - -
Aed1g2657 395 SUPERFAMILY DNA-binding domain 225 283 IPR016177 GO:0003677
Aed1g2657 395 ProSiteProfiles AP2/ERF domain profile. 225 282 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2657 Aed-Chr1 22060254 22061441 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2657 21 390 AP2-EREBP Transcription Factor Family AT4G13620 39.164 4.41e-61 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aed1g2657 AP2 1.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2657 - - gmx:100819431 562.762