Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2647 ATGGCCACAGCAGAAGAAGTTTCAACTTTGAAACTGTTGCGCCAATATCTCTTGGGGGATATTTCAGACCCTTTTCTCGCCAATCTCATTCCAGTAAAACTCGAACACCCCACCTCATCAGAACTTGATGATATGTGTTCAAATTCAAACTCCTCAGAACAAAGCAGCTTCTGCAAGTTTCTGGAATGCTTTGATTTTGAACCACACACAAAAGTGGAAGAAGGTCTCACTTCTCATCATAATAAGGTTGCAGCAACAAGTCCACCGCCCCAGAATTCAAATTTGGCAGAAGAACCAATGATGGTGTCAATGAAAAAGGAAGCAACAAGGCATTACAGAGGAGTGAGGAGAAGGCCATGGGGGAAGTTTGCTGCAGAGATTCGTGACCCGAAAAAGAAAGGGAGCAGAGTGTGGCTTGGAACATTTGAGACTGAGGTTGATGCTGCTAAGGCTTATGATTGTGCTGCCTTCAGAATGAGGGGTCATAAAGCAGTGTTGAATTTCCCTTTGGAGGCTGGAAAGTCTCATCCAGAACCCAACAACAGCAGTGGTAGGAAAAGGAGAAGAGAGCACACAACAACAACAGCTGCCACAAGTTCAAGTTTCATGTTATGTCATGAGTAA 624 0.4423 MATAEEVSTLKLLRQYLLGDISDPFLANLIPVKLEHPTSSELDDMCSNSNSSEQSSFCKFLECFDFEPHTKVEEGLTSHHNKVAATSPPPQNSNLAEEPMMVSMKKEATRHYRGVRRRPWGKFAAEIRDPKKKGSRVWLGTFETEVDAAKAYDCAAFRMRGHKAVLNFPLEAGKSHPEPNNSSGRKRRREHTTTTAATSSSFMLCHE 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2647 207 MobiDBLite consensus disorder prediction 80 96 - -
Aed1g2647 207 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF105 5 195 - -
Aed1g2647 207 SMART rav1_2 111 175 IPR001471 GO:0003700|GO:0006355
Aed1g2647 207 PRINTS Ethylene responsive element binding protein signature 112 123 IPR001471 GO:0003700|GO:0006355
Aed1g2647 207 PRINTS Ethylene responsive element binding protein signature 151 171 IPR001471 GO:0003700|GO:0006355
Aed1g2647 207 MobiDBLite consensus disorder prediction 170 207 - -
Aed1g2647 207 Gene3D AP2/ERF domain 110 171 IPR036955 GO:0003700|GO:0006355
Aed1g2647 207 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 195 - -
Aed1g2647 207 SUPERFAMILY DNA-binding domain 111 171 IPR016177 GO:0003677
Aed1g2647 207 CDD AP2 111 169 IPR001471 GO:0003700|GO:0006355
Aed1g2647 207 MobiDBLite consensus disorder prediction 75 96 - -
Aed1g2647 207 Pfam AP2 domain 111 162 IPR001471 GO:0003700|GO:0006355
Aed1g2647 207 ProSiteProfiles AP2/ERF domain profile. 111 169 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2647 Aed-Chr1 22015683 22016306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2647 109 189 AP2-EREBP Transcription Factor Family AT5G07580 79.012 7.51e-42 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Aed1g2647 AP2 7.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2647 - - gmx:100306125 281.567