Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2636 ATGATGATGAATAGTTCAGAAGAGACAGTGTTATTGCTAGTGAGTTTTATTCTTCTAACCCTTATAGTTACATTCACGGCTTATGTATGCTCTAATAACATTCCACGCACTAACAATAATGCTGTGCCTCCTGGTGGTGCCACACACTCCAACAACAACAACAACCACACCACAATCATCACTGTGGAGCCACCTGAGCCACGGTTCTTCTTAGATCACAGTACGAGTCTCCAATACTCCAAAGCCAAATTGTGTAGTAGCACTAGCACTAGCACTAGCACTAGCAGCAGCTCCTCATCAAGTTGTTCCATATGTTTGATGGATTACAAAGAATGTGATTCATTGAGAGTGCTTCCTTCTTGTGGTCACTTCTTCCATGTCAAGTGTGTTGATCCTTGGTTCACCATCAATTTGACATGTCCAGTTTGTAGGACCCCAATACCACTCCCAGATATATGCAAAAATTTGTAA 471 0.4183 MMMNSSEETVLLLVSFILLTLIVTFTAYVCSNNIPRTNNNAVPPGGATHSNNNNNHTTIITVEPPEPRFFLDHSTSLQYSKAKLCSSTSTSTSTSSSSSSSCSICLMDYKECDSLRVLPSCGHFFHVKCVDPWFTINLTCPVCRTPIPLPDICKNL 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2636 156 SUPERFAMILY RING/U-box 101 150 - -
Aed1g2636 156 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 149 IPR013083 -
Aed1g2636 156 SMART ring_2 102 143 IPR001841 -
Aed1g2636 156 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 9 155 - -
Aed1g2636 156 Pfam Ring finger domain 101 144 IPR001841 -
Aed1g2636 156 PANTHER RING-H2 FINGER PROTEIN ATL67 9 155 IPR044289 GO:0016567|GO:0016740
Aed1g2636 156 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2636 Aed-Chr1 21925199 21925669 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2636 14 150 C3H Transcription Factor Family AT5G06490 33.553 6.39e-24 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2636 - - gmx:102663850 210.305