Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2635 ATGAACAACAGCACCAACAACAAGGAAGATAGTGGCTTTGACCCAAGTGAGTTGACATATGGAGTAGCTTTCGTAATTGGGTTGATCTTCTTACTCCTCACCATAGCTTTTGCATGTGTGCGCCTTCGCATGGCTCGGGGTCCCAACATGCTCAATATTTTGGCTGGTATTGCACCTTCTCGCCACGACCCAAGACGATCAGAAGAAGACTCAGCCGAACAAGTTCACAACATTGATACGAGTTTTGAGAGTTATCCGAAGCTACTTTACTCTCAAGTAGCGAAGGGTTCAGGTGTTTCTTCTTCTAGCTGCTCCATCTGCTTAGGTGACTACAAAGAAAGTGACACGTTGAGGCTGCTTCCTCACTGTGACCATCTTTTCCACCTTGCTTGTGTTGATCCTTGGCTTATGTTGCATTCAACTTGTCCCATATGTAGAAAATCATCTCTTCAACTTCATACTGCCTCCAATTAG 474 0.4494 MNNSTNNKEDSGFDPSELTYGVAFVIGLIFLLLTIAFACVRLRMARGPNMLNILAGIAPSRHDPRRSEEDSAEQVHNIDTSFESYPKLLYSQVAKGSGVSSSSCSICLGDYKESDTLRLLPHCDHLFHLACVDPWLMLHSTCPICRKSSLQLHTASN 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2635 157 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Aed1g2635 157 SUPERFAMILY RING/U-box 88 150 - -
Aed1g2635 157 SMART ring_2 104 145 IPR001841 -
Aed1g2635 157 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 153 - -
Aed1g2635 157 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 150 IPR013083 -
Aed1g2635 157 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 153 IPR045899 -
Aed1g2635 157 Pfam Ring finger domain 103 146 IPR001841 -
Aed1g2635 157 CDD RING-H2_PA-TM-RING 106 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2635 Aed-Chr1 21923537 21924010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2635 18 150 C3H Transcription Factor Family AT5G06490 35.948 5.44e-24 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2635 - - gmx:102663718 247.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2635 1 21923537 21924010 Aed1g2635 1 21923537 21924010 ECH