Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2633 ATGGGGTATTTGTATCTCTTGCTGCTTCTATGTTTTTCTACCTTGTTATATGCTGCTTCTGCATTGAACTCTGATGGCTTGGCTTTGTTGTCCCTCTTGAGTGGTTGGACTATTGTGCCTAGTGACATAAACTCCACATGGAAGTTCTCTGATTCCACTCCATGCTCATCATGGGAAGGAGTGTATTGTGACAATGCCAATAATGTGGTTTCTCTAAACCTCTCTGGTTTTTCAATTTTTGGCCAATTAGGACCTCATCTTGGACATTTGATTCACTTGCAAACCATAGATTTATCAGATAACAATCTCTTTGGAAAAATTCCCCCGGAATTAAGCAATTGTAGCATGCTTGAGTACTTGAGCCTTTCCAAAAACAACTTCAGTGGAGGAATACCTGAATCCTTGTTTGAAATTTCTCCCCTGGAAGAACTGAATCTTAGCAACAACAGTTTAACCGGTTCCATTCCCTCAAGTGTTGGGAATATCACTAAGCTTGTCACACTGGATCTTTCTTTTAATCAGCTGTCAGGGACAATTCCATTTTCCATTGGAAATTGTAGTAAATTAGAGAATCTGTATTTGGAAAGGAATCAATTAGAGGGAGTTATTCCTGAGAGTCTAAACAATCTCAAAAATCTTCAGGAGTTATATCTCAATTATAATAATCTTAGCAGCACTGTTCAATTGGGATCTGGAAATTGCAAAAAGTTATGTATTTTGAGTCTTTCGTACAATAACTTCAGTGGGGGCATACCATCAAGCTTGGGGAATTGTAGTGGTCTAATAGAAATTTATGCTGCAGGGAATAACTTTGTTGGCAGTATACCATCAACCTTAGGCCTCCTGTCCAACCTTTCTATTCTAATCCTTTCAGAGAACCTATTTTCTGGGAAAATACCTCCACAGATTGGTAACTGCAAATCATTGAAAGAATTGCATTTGGATTCTAATGAACTTGAGGGAGAAATTCCTAGCGAATTGGGAAACTTGAGTAAACTACATGATCTTAGATTGTTTATAAACCTTTTGACAGGAGAAATTCCACTTGGCATATGGAAAATTCAAAGCCTTGAGCAGATCCATGTGTACCTTAATTACCTTTCAGGTGAGCTACCTTATGAGATGACAGAGCTCAAACATCTTAAGAATATCTCCTTGTATAACAACCAGTTCTCCGGAGTTATACCTCAAAGTTTAGGAATCAATAGAAGTTTGGTCGTGTTAGACTTCATGTATAATAATTTCACTGGTACCCTCCCACCAAATCTTTGTTTTGGAAAGCAACTGATAAAGCTGAATATGGGTTTCAATCAATTTTATGGTAATATACCTTCAGATGTGGGAAGGTGTACTACTCTAACAAGGGTGAGACTTGAAGAAAATAATTTCACTGGGCCTCTTCCTGATTTTGATATCAATCCAAATCTCTCTTACATGACCATCAGCAACAACAATATCAGTGGAGCAATTCCATCAAGTTTGGCAAACTGCACAAATCTCCCTTTTTTAAATTTATCCATGAACAGCTTGACAGGTCTTGTACCTTCAGAGCTAGGAAGCCTTGTAAATCTTCAGACTTTGGATCTTTCTCACAATAACTTGGAAGGTCCTTTGCCACATCAGCTTGCAAACTGTGCCAAAATGATGAAGTTTGATGTCGGATTCAATTCCTTGAATGGTTCGTTTCCATTGAGTTTTCGGAACTGGACAACATTAACAACTCTAGTTCTATCAGAGAATCGGTTTAATGGTGGTATCCTAGATTTATTGTCAGAATTTAAAAGGCTCAATGAGTTACAGCTTGGTGGAAATATGTTTGGAGGAAACATTCCTAGATCAATTGGAAAACTGGTGAATTTGATATATGCACTAAATCTAAGTGCAAATGGACTTATAGGTGATCTTCCTAAGGAGATTGGAAACTTGAAGAATCTGGTAAGCCTGGATCTATCTTGGAACAATTTGACAGGAAGTATACAAGTTCTTGTTGAGCTCAGTTCATTATCTGAATTCAACATCTCATATAATTCTTTTGAAGAGAATGCTTATACAACAACAAAGGGTAAGGAATCTGATGTATACAGTTATGGGGTAGTGTTGCTGGAGCTGATATCCAGAAAGAAGCCATTGGATCCATCATTTATTGAAGGAACGAATATAGTTAATTGGGCTAGTTCTATCTGGGAAGAAACTGGAGTTGTTGATGAAATTGTTGATTCAGAGCTTGATAGTGAAATTTCAAATTTTGATGTGATGAAACAAGTTACCAAGGTGCTTTTGGTGGCTTTGAGATGCACAGAAAATGATCCACGCAAGAGACCAACGATGAGGGATGTTATCAAGCAATTGTAG 2352 0.3763 MGYLYLLLLLCFSTLLYAASALNSDGLALLSLLSGWTIVPSDINSTWKFSDSTPCSSWEGVYCDNANNVVSLNLSGFSIFGQLGPHLGHLIHLQTIDLSDNNLFGKIPPELSNCSMLEYLSLSKNNFSGGIPESLFEISPLEELNLSNNSLTGSIPSSVGNITKLVTLDLSFNQLSGTIPFSIGNCSKLENLYLERNQLEGVIPESLNNLKNLQELYLNYNNLSSTVQLGSGNCKKLCILSLSYNNFSGGIPSSLGNCSGLIEIYAAGNNFVGSIPSTLGLLSNLSILILSENLFSGKIPPQIGNCKSLKELHLDSNELEGEIPSELGNLSKLHDLRLFINLLTGEIPLGIWKIQSLEQIHVYLNYLSGELPYEMTELKHLKNISLYNNQFSGVIPQSLGINRSLVVLDFMYNNFTGTLPPNLCFGKQLIKLNMGFNQFYGNIPSDVGRCTTLTRVRLEENNFTGPLPDFDINPNLSYMTISNNNISGAIPSSLANCTNLPFLNLSMNSLTGLVPSELGSLVNLQTLDLSHNNLEGPLPHQLANCAKMMKFDVGFNSLNGSFPLSFRNWTTLTTLVLSENRFNGGILDLLSEFKRLNELQLGGNMFGGNIPRSIGKLVNLIYALNLSANGLIGDLPKEIGNLKNLVSLDLSWNNLTGSIQVLVELSSLSEFNISYNSFEENAYTTTKGKESDVYSYGVVLLELISRKKPLDPSFIEGTNIVNWASSIWEETGVVDEIVDSELDSEISNFDVMKQVTKVLLVALRCTENDPRKRPTMRDVIKQL 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2633 783 Pfam Leucine Rich repeat 643 657 IPR001611 GO:0005515
Aed1g2633 783 Gene3D Ribonuclease Inhibitor 472 548 IPR032675 -
Aed1g2633 783 Gene3D Ribonuclease Inhibitor 622 677 IPR032675 -
Aed1g2633 783 Gene3D Ribonuclease Inhibitor 26 136 IPR032675 -
Aed1g2633 783 Gene3D Ribonuclease Inhibitor 549 621 IPR032675 -
Aed1g2633 783 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 3 135 - -
Aed1g2633 783 SUPERFAMILY RNI-like 371 680 - -
Aed1g2633 783 Gene3D Transferase(Phosphotransferase) domain 1 678 783 - -
Aed1g2633 783 Pfam Leucine rich repeat N-terminal domain 23 64 IPR013210 -
Aed1g2633 783 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 3 135 - -
Aed1g2633 783 SMART LRR_sd22_2 162 194 - -
Aed1g2633 783 SMART LRR_sd22_2 521 547 - -
Aed1g2633 783 SMART LRR_sd22_2 642 667 - -
Aed1g2633 783 SMART LRR_sd22_2 210 242 - -
Aed1g2633 783 Gene3D Ribonuclease Inhibitor 230 368 IPR032675 -
Aed1g2633 783 SUPERFAMILY Protein kinase-like (PK-like) 684 782 IPR011009 -
Aed1g2633 783 ProSiteProfiles Leucine-rich repeat profile. 644 666 IPR001611 GO:0005515
Aed1g2633 783 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 129 679 - -
Aed1g2633 783 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 680 782 - -
Aed1g2633 783 PRINTS Leucine-rich repeat signature 521 534 - -
Aed1g2633 783 PRINTS Leucine-rich repeat signature 165 178 - -
Aed1g2633 783 Gene3D Ribonuclease Inhibitor 369 471 IPR032675 -
Aed1g2633 783 Gene3D Ribonuclease Inhibitor 137 229 IPR032675 -
Aed1g2633 783 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 129 679 - -
Aed1g2633 783 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 680 782 - -
Aed1g2633 783 SMART LRR_typ_2 210 234 IPR003591 -
Aed1g2633 783 SMART LRR_typ_2 521 545 IPR003591 -
Aed1g2633 783 SMART LRR_typ_2 378 401 IPR003591 -
Aed1g2633 783 SMART LRR_typ_2 282 306 IPR003591 -
Aed1g2633 783 SMART LRR_typ_2 187 209 IPR003591 -
Aed1g2633 783 SMART LRR_typ_2 307 330 IPR003591 -
Aed1g2633 783 SMART LRR_typ_2 90 114 IPR003591 -
Aed1g2633 783 SMART LRR_typ_2 162 186 IPR003591 -
Aed1g2633 783 SMART LRR_typ_2 642 665 IPR003591 -
Aed1g2633 783 SUPERFAMILY RNI-like 71 449 - -
Aed1g2633 783 Pfam Leucine rich repeat 92 151 IPR001611 GO:0005515
Aed1g2633 783 Pfam Leucine rich repeat 164 223 IPR001611 GO:0005515
Aed1g2633 783 Pfam Leucine rich repeat 474 534 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2633 Aed-Chr1 21911495 21915060 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2633 680 783 Receptor kinase-like Gene Family AT1G17750 49.074 4.71e-24 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Aed1g2633 LRR_8 1.2e-09 CL0022
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2633 - - gmx:100817655 1082.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2633 1 21911495 21915060 Aed1g2633 1 21911495 21915060 ECH