Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2622 ATGTCGGAAAGAACCAACATGGAATTAGCACCAGCACCAGAAGAACAACTCTCTTTTGGGGATCACACCAACATTGTCAAAGGTAAAAGAACCAAAAGGGTAAGGCCACAATCCCCTATCCCCTTCTCCATCACTGCCAATTCTTCCACTGGAGGCGTCGACGAAGAGAAAGAAGAACATTGCTACAATGGTGACATTAACAACAACAATAACAATAGCTCTTCCACCACTTCTTCTGTAGGATTGCAAGACAGCACAGATGAAGAGGAGGACATGGCGAATTGCCTGATCCTTCTAGCACAAGGACCATCCCGGGAATCCCCGAAACAGAAACAGCAGCAGGCGGAGGAAGGAATGAACTACACAAAGTACAGCAGTAGAAAATTCTTGGAAGCTGCTACCTTGGGGTCAAGCAGGGCAGGGTACTATGTGTATGAATGCAAGACATGCAACAGAACCTTCCCTTCATTTCAAGCACTTGGAGGCCACAGGGCCAGTCACAAGAAGCCTAAGGCATTGATGGCTATGGGCCATCAAGACAAAAAACACCACCTTTTGTCATCTGATGAGGAAGAGTTTCAATTGAAGACCAATAATAAGTCATCGTTTTCCCTTCAATTCAATACAAAGGGGAATTTGTACAGCCACAACCACAACAACAAAAAGTCCAAGGTGCATGAGTGCTCCATCTGTGGTGCTGAATTCACATCAGGACAAGCATTGGGAGGCCACATGAGACGCCACCGCGCTCCAGTTGGAACCATCACTGCCACCGCCACCACCACCGCCACCGCCCCCGCCACCGCCCCCGTGCCCACCGTCACTGCCACCACACTGTCCTTCACCCCATTGGCTTTGGAGCCAGAAGAAGATCATCCCAGAAAGAAAAGACATGTCTTGAATTTGGATTTGGATCTCAACCTTCCTGCCCCAGAAGATGATCATAGAGAATCCAAGTTTGCCTTTGTATCCAAGCAACAACAACAACAACATGGACAGAAACAGCAACAGCAGCAACAAACAAGTCTTGTCTTCCCTGCACCAGCTTTGGTGAATTGTCATTACTAA 1068 0.4775 MSERTNMELAPAPEEQLSFGDHTNIVKGKRTKRVRPQSPIPFSITANSSTGGVDEEKEEHCYNGDINNNNNNSSSTTSSVGLQDSTDEEEDMANCLILLAQGPSRESPKQKQQQAEEGMNYTKYSSRKFLEAATLGSSRAGYYVYECKTCNRTFPSFQALGGHRASHKKPKALMAMGHQDKKHHLLSSDEEEFQLKTNNKSSFSLQFNTKGNLYSHNHNNKKSKVHECSICGAEFTSGQALGGHMRRHRAPVGTITATATTTATAPATAPVPTVTATTLSFTPLALEPEEDHPRKKRHVLNLDLDLNLPAPEDDHRESKFAFVSKQQQQQHGQKQQQQQQTSLVFPAPALVNCHY 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2622 355 MobiDBLite consensus disorder prediction 105 119 - -
Aed1g2622 355 MobiDBLite consensus disorder prediction 322 341 - -
Aed1g2622 355 MobiDBLite consensus disorder prediction 99 119 - -
Aed1g2622 355 ProSitePatterns Zinc finger C2H2 type domain signature. 147 167 IPR013087 -
Aed1g2622 355 ProSiteProfiles Zinc finger C2H2 type domain profile. 226 248 IPR013087 -
Aed1g2622 355 Pfam C2H2-type zinc finger 144 170 - -
Aed1g2622 355 Pfam C2H2-type zinc finger 225 251 - -
Aed1g2622 355 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 21 355 - -
Aed1g2622 355 SUPERFAMILY beta-beta-alpha zinc fingers 143 172 IPR036236 -
Aed1g2622 355 MobiDBLite consensus disorder prediction 1 87 - -
Aed1g2622 355 MobiDBLite consensus disorder prediction 64 83 - -
Aed1g2622 355 ProSiteProfiles Zinc finger C2H2 type domain profile. 145 172 IPR013087 -
Aed1g2622 355 SUPERFAMILY beta-beta-alpha zinc fingers 223 249 IPR036236 -
Aed1g2622 355 SMART c2h2final6 145 167 IPR013087 -
Aed1g2622 355 SMART c2h2final6 226 248 IPR013087 -
Aed1g2622 355 Gene3D Classic Zinc Finger 200 264 - -
Aed1g2622 355 ProSitePatterns Zinc finger C2H2 type domain signature. 228 248 IPR013087 -
Aed1g2622 355 PANTHER ZINC FINGER PROTEIN ZAT5 21 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2622 Aed-Chr1 21830526 21831593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2622 25 355 C2H2 Transcription Factor Family AT5G04390 44.475 1.91e-82 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed1g2622 zf-C2H2_6 7.1e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2622 - - gmx:100799383 468.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g0459 8 3879839 3880699 Aed1g2622 1 21830526 21831593 ECH
Aed2g1895 2 23578433 23579314 Aed1g2622 1 21830526 21831593 ECH
Aed1g1083 1 10699725 10700672 Aed1g2622 1 21830526 21831593 ECH
Aed1g2622 1 21830526 21831593 Aed1g2622 1 21830526 21831593 ECH