Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2618 ATGGGTCGCGAGACTCTGTGCCTTCCAACCCCACCACCAACCACCACAGTGAACCCAGTGGCACCGCCGCCACCACCACCTGCACCACCTACCTCTCTTGCTCCTGGCTTCAGGTTCCACCCAACTGACGAGGAGCTTGTTATCTACTACCTCAAGCGCAAGGTTTCTGGAAAAAGCTTCCGATTTGACGCCATATCCGAGGTCGACATATACAGGAGCGAGCCCTGGGACCTAGCAGATAAGTCAAGGCTGAAGACCAGGGACCAGGAGTGGTATTTTTTCAGTGCATTGGATAAGAAGTATGGGAATGGTGGGAGGATGAATAGGGCTACTAGCAAAGGGTATTGGAAAGCCACTGGAAATGATCGACCAGTGAGGCATGACCAAAGGACCGTGGGACTGAAGAAAACTTTGGTCTTTCACAGTGGCAGAGCTCCTGATGGGAAGAGGACTAATTGGGTCATGCATGAGTACAGGCTTGTTGAAGAGGAGCTTGAGAGGGCTGGGAATGGATCCTCTCAGCCTCAGGATGCGTATGTTTTGTGTAGAGTGTTTCACAAAAATAACATAGGACCTCCAAATGGGCAACGGTATGCACCCTTCATTGAAGAAGAGTGGGATGACGCATCAGGAATGGTTCCAGGGGCAGACCCTGTGGATAACGGTTCTTTTGCCCACCAACCACGTGATGAAGCCAACCGTGGTGTTTTATGTGCTGAAGGGAGAAATGGTGTTGCACAGGACACTCAATCTATCAACAAACCTCCATTTGATGTGAACAAGCTTCCTATAGAAACTCAAAATCTTCTAGCTGTGTGCAAGAGGGAAAGCATGGCTGAGTATCCATCACCCGAAAAGGATGATAATAATTGTAAGCACATGGATGACTACCCTTCACCTCAAACAGATAATCCAAAGCCTTTCTCTCAAATATACAAACGAAGGCGGCATAACTTGAACTCCAACAACAACTCTAATGTTTCTGGAGATTCAATCCGAACCAGCCAGGATCCGTGCTCCTCTACAATAACTACTGCTGCAACTGCACTCCCAACCACTGCTGCTGCTGCCGCTGGCACAACCACCAACACTGCACCAAAGAAGCATTTTCTGTCTGCACTGGTGGAGTTTTCCCTGCTAGAATCCCTGGAATCAAAGGATAGCCTTGCTTCAGTTAAGGCACCAGATTTTGACACTGAAAATCTCGAGTCATCCATGCCACCAAGCTGTGCAAAGTTCATCAAGCACATGCAGAGTGAGATGCAGAAGATTACAGTTGAAAAGGAGACGATGAGGTTTGAGATGATGAGTGCACAAGCGATGATTAACATTCTCCAGTCTCGCGTCGAGGTTCTCAACAAAGAAAATGAGGAATTGAAGAGGATGATGGCCCAAAATCCTTAG 1404 0.4808 MGRETLCLPTPPPTTTVNPVAPPPPPPAPPTSLAPGFRFHPTDEELVIYYLKRKVSGKSFRFDAISEVDIYRSEPWDLADKSRLKTRDQEWYFFSALDKKYGNGGRMNRATSKGYWKATGNDRPVRHDQRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRLVEEELERAGNGSSQPQDAYVLCRVFHKNNIGPPNGQRYAPFIEEEWDDASGMVPGADPVDNGSFAHQPRDEANRGVLCAEGRNGVAQDTQSINKPPFDVNKLPIETQNLLAVCKRESMAEYPSPEKDDNNCKHMDDYPSPQTDNPKPFSQIYKRRRHNLNSNNNSNVSGDSIRTSQDPCSSTITTAATALPTTAAAAAGTTTNTAPKKHFLSALVEFSLLESLESKDSLASVKAPDFDTENLESSMPPSCAKFIKHMQSEMQKITVEKETMRFEMMSAQAMINILQSRVEVLNKENEELKRMMAQNP 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2618 467 SUPERFAMILY NAC domain 30 188 IPR036093 GO:0003677|GO:0006355
Aed1g2618 467 MobiDBLite consensus disorder prediction 318 337 - -
Aed1g2618 467 MobiDBLite consensus disorder prediction 1 35 - -
Aed1g2618 467 Pfam No apical meristem (NAM) protein 35 160 IPR003441 GO:0003677|GO:0006355
Aed1g2618 467 Gene3D NAC domain 42 190 IPR036093 GO:0003677|GO:0006355
Aed1g2618 467 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 25 464 - -
Aed1g2618 467 MobiDBLite consensus disorder prediction 279 294 - -
Aed1g2618 467 MobiDBLite consensus disorder prediction 12 34 - -
Aed1g2618 467 PANTHER NAC DOMAIN-CONTAINING PROTEIN 78-LIKE 25 464 - -
Aed1g2618 467 Coils Coil 435 462 - -
Aed1g2618 467 MobiDBLite consensus disorder prediction 279 308 - -
Aed1g2618 467 ProSiteProfiles NAC domain profile. 33 187 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2618 Aed-Chr1 21788317 21795786 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2618 1 461 NAC Transcription Factor Family AT3G10480 44.123 1.17e-117 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aed1g2618 NAM 3.1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2618 - - gmx:100808783 789.26