Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2617 ATGGCACGGATGGGTCCAGGGTTCCGATTCCACCCCACCGACGAAGAACTGATGGTGTTCTACCTGAAGCGCAAGATGACCGGAAAACTCTCCCGGTACGACCACATCGCCGTCGTCGACGTCTACAGCCTCGAGCCCTGGGACCTTCCACGATGTGTATGTGGTGTGATATTCAAGAAGAGTGGTGCTGGACCCAAGAATGGGGCAAAATATGGTGCTCCATTAGACGAGAAAGAGTGGGATGTGGATGATGATGAGGAAAAAGAGGAGAATGAGCAGAGGGAGGTGGATCCATTGCCGGCTGCTGCTGAAAACGTGGTGCCTCCTCCTCCTCCCTTGCAGGCTATTGGTGATGGTGAGGTTTTCGATGATGTGACTGAAGGGAACTATGTTGAAACCGACGACCTTGACATGGAGCTTGATTGGAGTGATATAATTGGGAGCGATACTTTTCCAACATCAAACTTTCATCATGGGGAGTGTAGTAACCATGCTGAGTATCCCGAAGAATTCATCAAGGATCAGGAGCCACTGGCAGGCACTTTTGGAATTTCTTGGCTTGATAATGACTGGCCTCTTGATATGACTGAGCAACATGGTGTGGGTACAAATTCTGGGAACGATGGAGACAATGGTGAGCTAAGCAATATTGGCAATTGTCTGAATTTCAATGATACATCAAATAATATGGATCAGGATCAGTACTGGGATGCCATCGAGAATCTTCCAATGGCTGATGATGGATTTGTGGAATTACATGATTTTTTGAATGTGAATGAGGGTAATCCTACTGAGGCTGATCCTTCTGTGAATGCTATGCTAGACGAGTATGCTGCACTCACTGATGATGATATTTGCCAGTATATATCATTTGATTCTCCTCAGATTCCAGAGAGCGAAAACTTCATCCCCAACCAAGGATCACCTTTCACCCAGCAGAATGTGGAGGGAGAAACCGCTGACAAAGCTGTGGTTAATAAGGCTTCTTCAGTGCAAAATACACAGGAGGCAAACTTTGAACCAGGAAATACAAATCCATTTGTTAAGCAGGCCTATGGATGGTTAGCCAGCATGCCTGCTGCACCTGCACATGCTATGGAGTTTCCTGCTAAGGAGATGGCTCTTGGTCTTCATCCTGCAGCTCAGTCTTCCCATTCAGCTCATATAACTACAGGTATGATAAGCATAACCGACATTACTTTTAGAGGCAATGCGATGGATTGGATGACGATGAGCAAAAATGGAGGGTTTAACACTGTCATATCCACTGGCTTTTCTCAACCGGATGTTGATTCTGCTGCTGCTGCTTTGATGTCTGTCTCTGGCAAGACTGCATTTGTGTTGTCACATGGCTGGATTTTCCTGACTGGTTTCTCAGTTGTTATTCTTTCACTGAGTTTCAAGATTGGAAGCATCATGTATACTGGCAAATGA 1434 0.4596 MARMGPGFRFHPTDEELMVFYLKRKMTGKLSRYDHIAVVDVYSLEPWDLPRCVCGVIFKKSGAGPKNGAKYGAPLDEKEWDVDDDEEKEENEQREVDPLPAAAENVVPPPPPLQAIGDGEVFDDVTEGNYVETDDLDMELDWSDIIGSDTFPTSNFHHGECSNHAEYPEEFIKDQEPLAGTFGISWLDNDWPLDMTEQHGVGTNSGNDGDNGELSNIGNCLNFNDTSNNMDQDQYWDAIENLPMADDGFVELHDFLNVNEGNPTEADPSVNAMLDEYAALTDDDICQYISFDSPQIPESENFIPNQGSPFTQQNVEGETADKAVVNKASSVQNTQEANFEPGNTNPFVKQAYGWLASMPAAPAHAMEFPAKEMALGLHPAAQSSHSAHITTGMISITDITFRGNAMDWMTMSKNGGFNTVISTGFSQPDVDSAAAALMSVSGKTAFVLSHGWIFLTGFSVVILSLSFKIGSIMYTGK 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2617 477 Coils Coil 75 95 - -
Aed1g2617 477 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 232 472 - -
Aed1g2617 477 ProSiteProfiles NAC domain profile. 4 153 IPR003441 GO:0003677|GO:0006355
Aed1g2617 477 PANTHER NAC DOMAIN-CONTAINING PROTEIN 53-LIKE 4 50 - -
Aed1g2617 477 PANTHER NAC DOMAIN-CONTAINING PROTEIN 53-LIKE 232 472 - -
Aed1g2617 477 SUPERFAMILY NAC domain 3 53 IPR036093 GO:0003677|GO:0006355
Aed1g2617 477 Gene3D NAC domain 13 94 IPR036093 GO:0003677|GO:0006355
Aed1g2617 477 MobiDBLite consensus disorder prediction 68 95 - -
Aed1g2617 477 PANTHER NAC DOMAIN-CONTAINING PROTEIN 53-LIKE 55 86 - -
Aed1g2617 477 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 55 86 - -
Aed1g2617 477 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 50 - -
Aed1g2617 477 Pfam No apical meristem (NAM) protein 6 51 IPR003441 GO:0003677|GO:0006355
Aed1g2617 477 MobiDBLite consensus disorder prediction 78 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2617 Aed-Chr1 21781283 21787111 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2617 1 96 NAC Transcription Factor Family AT5G04410 36.893 3.34e-14 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aed1g2617 NAM 8.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2617 - - gmx:100808260 580.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2617 1 21781283 21787111 Aed1g2617 1 21781283 21787111 ECH