Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2615 ATGTCAGGAGAGCAAATGTTGACATCCAATGAAGAAGAGCATAACAAATCTCAGACTCCATTCGGTAACAAAAGTGGCTACAATTCAAGAACAGGCATCTATCACTCTCTGGTTAAGCTTGGCACAAAGCAGGAAATCCCAACAAGGCCTGACCTTAACGTTGCCAATTTTGTTCTGTCACAGTTCCCACAACAGCACCTTGCTGAGGCAAGAGCTGCATTCATTGATGCAACAACTAATCTGAGTGTTAGCTATGGTGAGCTAAGAAGGTCTATTTACTCTCTTGCATCAGCTTTGTTCCATGGACTCGAGGTTAGGAAAGGTGATGTGGTATTTTTATTGTCACCAAACTCAACCTTGTACTCAGCCATATGCCTAGCTGTGCTATCAGTTGGAGCAGTTCTCACCACTGCCAACCCCATCAACACTGCATCAGAAATCGCGAAGCAAGTGCGTGATTCGGGTGCTAAGCTAGCCATCTCAGCACCTGAGGAGCTACACAAATTGCTCCCAACTGGGGTTCCTACAATTCTCACTTCTCGTCCTAACCATGACGATATGTCAATGTTAACAGTTGAAGAGTTAATAGAAGGATGTTGTACTTCACCAGAGTTGCTTCAACTTCAAGTTCCCGTGGCACAATCAGACACTGCTGCTATACTTTACTCTTCAGGAACCACAGGGGTAAGCAAAGGTGTGGTTTTGACTCATGCAAATCTCATTTCCATAATGAGACTACTTTTATGGTCTGCTGATGTAAGTGGATCACAAGATGATGTTTTCTTGGCCTTCATTCCAATGTTTCACATCTATGGACTTGTGTTCTTTGGACTAGGATTGCTGTGTGTTGGTGTTACAACAGTTTTGATGCAGAAGTATGACTTCCAAGGTATGCTTGATGCAATTCAGAGGCACGACGTTAACAACATAGCAGCAGTGCCACCAGTGATCCTTGCACTAGTGAAACATGCAAGGAAAGCTAGCAGGTGTGACTTGTCCAGCCTCAGAAGGGTGGGGTCAGGTGCTGCACCATTGAGCAAGGAAGTGGCACACGAGTTTAGAAGGATGTTTCCTTGGGTTGAACTAAGGCAAGGTTATGGCCTAACAGAAAGTAGCGGCGGAGCAACGTTTTTTGCCTCAGATAAAGATGCTAAAGCTCATCCAGATTCATGTGGGAAGCTGATTCCAACTTTTTGTGCAAAAGTTGTAGACATCGAAACGGGGAAGCCTTTGCCTCCTCACAAAGAAGGAGAGTTGTGGTTCAAAAGTCCTACTATTATGAAAGGATATCTAGGAAATTTGGAGGCAACAAGTGCAACTATTGACTCAGAAGGGTGGTTGAAGACTGGTGATCTTGGATACATTGATGAGAATGGATTTGTGGCTCCTGCAGAACTGGAATCTGTGCTGCTAAGTCATCCCCTTATAGTTGATGCAGCAGTTATACCGGTTGAAGATGAAGAAACTGGACAGATACCAATGGCATATGTTGTGAGAGCAGCTGGTTCTGAACTCTCAAAAGACCAAGTCATTCAATTTGTTGCAGGCCAGGTAACTCTATTTCCTATGCTCATTTTAACTGTTTTTTTTTTGCTTAAAAGTAAAGTGGAGAATTTTCAGGTGGCTCCATATAAGAAAGTGAGAAGGGTGAGTTTCATTGACACTATTCCAAAGTCATCGGCTGGCAAGATATTGCGGAAGGATCTTGTTTCTCAAAGCAAATATCAACTTGTCTCCAAGTTATGA 1746 0.4341 MSGEQMLTSNEEEHNKSQTPFGNKSGYNSRTGIYHSLVKLGTKQEIPTRPDLNVANFVLSQFPQQHLAEARAAFIDATTNLSVSYGELRRSIYSLASALFHGLEVRKGDVVFLLSPNSTLYSAICLAVLSVGAVLTTANPINTASEIAKQVRDSGAKLAISAPEELHKLLPTGVPTILTSRPNHDDMSMLTVEELIEGCCTSPELLQLQVPVAQSDTAAILYSSGTTGVSKGVVLTHANLISIMRLLLWSADVSGSQDDVFLAFIPMFHIYGLVFFGLGLLCVGVTTVLMQKYDFQGMLDAIQRHDVNNIAAVPPVILALVKHARKASRCDLSSLRRVGSGAAPLSKEVAHEFRRMFPWVELRQGYGLTESSGGATFFASDKDAKAHPDSCGKLIPTFCAKVVDIETGKPLPPHKEGELWFKSPTIMKGYLGNLEATSATIDSEGWLKTGDLGYIDENGFVAPAELESVLLSHPLIVDAAVIPVEDEETGQIPMAYVVRAAGSELSKDQVIQFVAGQVTLFPMLILTVFFLLKSKVENFQVAPYKKVRRVSFIDTIPKSSAGKILRKDLVSQSKYQLVSKL 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2615 581 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 540 580 - -
Aed1g2615 581 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 19 521 - -
Aed1g2615 581 ProSitePatterns Putative AMP-binding domain signature. 220 231 IPR020845 -
Aed1g2615 581 CDD 4CL 46 569 - -
Aed1g2615 581 Gene3D - 460 577 IPR045851 -
Aed1g2615 581 SUPERFAMILY Acetyl-CoA synthetase-like 69 572 - -
Aed1g2615 581 MobiDBLite consensus disorder prediction 1 28 - -
Aed1g2615 581 Pfam AMP-binding enzyme C-terminal domain 465 563 IPR025110 -
Aed1g2615 581 Pfam AMP-binding enzyme 71 461 IPR000873 -
Aed1g2615 581 Gene3D - 41 459 IPR042099 -
Aed1g2615 581 PANTHER AMP-DEPENDENT SYNTHETASE AND LIGASE FAMILY PROTEIN-RELATED 540 580 - -
Aed1g2615 581 PANTHER AMP-DEPENDENT SYNTHETASE AND LIGASE FAMILY PROTEIN-RELATED 19 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2615 Aed-Chr1 21769303 21771612 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2615 24 577 Monolignol Biosynthesis Gene Families AT1G20500 40.035 1.60e-136 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2615 K10526 - gmx:100783104 946.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2615 1 21769303 21771612 Aed1g2615 1 21769303 21771612 ECH