Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2609 ATGACAGATTTTGAGCCGCTACAGCAGAAGCCTGAGCCTGCTGATGCCCATGCCGAGTTTGAGCGTGGATTGGGGGACTTTATGCGTGGGCACTTGGATGATTGTATGTCCTTTGCTTCATGTAGCTCGTCCCGTGCACCAGATGATGAGGATGATGAGGGTGATCAGCTGGTTCGGAGGAGAAGGAGGTCTGACCTTGAAGGGGATGATTTGGCTGAGTCATCGGCTGCACGCCGGCGGCATTCAAGGATTCTGAGCAGGTGGGCTGCACGGCAGGCACAGGAGATGATAACTACGATTGAGAGGAGGAATCGAGAGTCTGAGTTGATGGCGCTTGCTGGGTTGCATACTGTGTCGATGTTGGATTCTTCTTTCCTGAGGGGCTCGCAGTCTCCAACTTCTGGCCAGGAGGGGGCTGTGGAGAGGCCGAGCACTCAGGCGTCTGCCATTCTGCAAATGTGGCGCGAATTGGAAGATGAACATTTGTTAAACCGGGCACGTGAAAGGATGAGGGTGAGGTTGAGGCACCAGAGGAATTCTGACTCCAATACCAATGTGTCCAGTACCATGTCTGATAGTCGAGGCAGTGAGAATCAAGGGAGTTTGGGGGATGCAAGTGGAAGTGAAAATGATTATGGTACTTGGTCACATGATCAGATTGGATCGAGGAATGCACGTGGGGATCTTAATGGGTCTAGCAGGGAGCAATCTCCTGATCTTGGCGAAGTTGAGAGGGAGAGAGTTAGACAGATTGTTCAGGGATGGATGGAAAGTGGTATTAGTGATCATTCATCTAATGTGAGTCAGAGAAACAATAACCGGAGAGCAGAATGGCTTGGAGAAACGGAGCGTGAGAGGGTAAGAAATATCAGGGAATGGGTGCAAATGATTAGCCAACAGAGAAGTTCGCGTGGGAGCCGGAGGGATGCTCAAGTAAGTGAGGGTGCTCAAGCTGATCGAGTCCGCGATGTAGTAGCTGATAATGACGAGAGTCAGCCAGAGCATGTTCGGCGGGACATGTTAAGGTTGCGTGGCAGACAGGCTCTAGTTGATTTGCTTGTGAGGGTAGAACGGGAAAGACAAAGAGAGCTTCAGGGCTTGTTGGAGCACCGAGCTGTTTCTGATTTTGCTCATCGCAACCGTATTCAGTCACTGCTCAGAGGTAGATTCCTCCGAAATGAAAGAACTGATGAAGATGAGAGGCCACCATCTATGGCTGCAAGTGAATTAGTTCAGCTAAGACAACGACACACGGTCTCTGGTTTAAGGGAGGGGTTTCGTTCAAGATTAGAAACAATTGTTCGTGGTCAAGCAGGCACCAGTCCTGATACCACATCAAATAGTAATGTGAGTGAAACAAGAGGTGATGAGAACCAAGCAAACAGTCTGGTAGATGACCAACAAGAAAATTATGAACAACAGCAGATTAGGAGCCTGGAAACTGATGTGCATCAGTTGCCTAATCGAACAGGAACTTTGGAGAGTGGCACAAGTGAGAGTATTAGTTGGCAAGAAGCTAGTAATCAAGGAGGGAATTGGCAGGAACAAATTGCTGAAGAAGGGGGAGGAAACTGGCAACAGAGTCCATTCAATCAGACGAGAGATGGAGGAGATGTTGGTGATTGGCAACAGGAACCTTCCAGAAATTTAGCTGGGGAAGAAGATCCTCATCCACGGGAAGCTCAAAGAATTTGGCATGAGGATAATACAAGGGAAACTGCTGGTAATTGGTCCGAAGGACCTTCTGGAGCTTCAAGGAATCGCCGTGGGGTTCCTTTGAGAAGATTCAATAGATTTCATCCACCTGATGATGATAATGTATACAGTATGGAGCTTAGAGAACTTCTGAGCAGGAGAAGTGTTTCTAACCTTCTACGTAGTGGTTTCCGTGAAAGTCTGGACCAACTAATACAGTCATATGTGGAAAGGCAAGGTCGTGCACCGATTGACTGGGATTTGCATCGGAACTTGCCAACACCAACTCCTGCCTCTCCTGAGCGGGACCCAGACCAGCAGGGTGATGAACGTGATGAGGGTCAGCGTGAAACCATTAACAGACCTCCACTGGTGTTGCCTTCTCCACCAGTACCCCCGCCACAACCTCTGTGGCACCAGGATTTGCATCAAACAGGATGGTCTCGCCATAGCATGCATCGTTCTGAAATTGAGTGGGAGATAATGAATGATTTAAGATCAGACATGGCAAGACTTCAGCAAGGCATGAACCACATGCAGAGGATGTTGGAGGCCTGCATGGATATGCAACTGGAGTTGCAGCGCTCTGTCAAACAGGAAGTATCTGCAGCTCTGAACCGCTCAGCTGGTGAAAATGGATTGAGTGCTGAGACTTCTGATGATGGGTCTAAATGGGGGCATGTGAAGAAAGGAACTTGCTGTGTTTGTTGTGATAGCCATATAGATTCTCTTTTGTACAGATGTGGGCACATGTGCACTTGTTCAAAATGTGCCAATGAGTTAATTCGTGGTGGTGGTAAGTGTCCTTTATGCCGAGCACCAATTGTTGAGGTGGTCCGAGCATATTCCATACTGTAA 2553 0.4853 MTDFEPLQQKPEPADAHAEFERGLGDFMRGHLDDCMSFASCSSSRAPDDEDDEGDQLVRRRRRSDLEGDDLAESSAARRRHSRILSRWAARQAQEMITTIERRNRESELMALAGLHTVSMLDSSFLRGSQSPTSGQEGAVERPSTQASAILQMWRELEDEHLLNRARERMRVRLRHQRNSDSNTNVSSTMSDSRGSENQGSLGDASGSENDYGTWSHDQIGSRNARGDLNGSSREQSPDLGEVERERVRQIVQGWMESGISDHSSNVSQRNNNRRAEWLGETERERVRNIREWVQMISQQRSSRGSRRDAQVSEGAQADRVRDVVADNDESQPEHVRRDMLRLRGRQALVDLLVRVERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNERTDEDERPPSMAASELVQLRQRHTVSGLREGFRSRLETIVRGQAGTSPDTTSNSNVSETRGDENQANSLVDDQQENYEQQQIRSLETDVHQLPNRTGTLESGTSESISWQEASNQGGNWQEQIAEEGGGNWQQSPFNQTRDGGDVGDWQQEPSRNLAGEEDPHPREAQRIWHEDNTRETAGNWSEGPSGASRNRRGVPLRRFNRFHPPDDDNVYSMELRELLSRRSVSNLLRSGFRESLDQLIQSYVERQGRAPIDWDLHRNLPTPTPASPERDPDQQGDERDEGQRETINRPPLVLPSPPVPPPQPLWHQDLHQTGWSRHSMHRSEIEWEIMNDLRSDMARLQQGMNHMQRMLEACMDMQLELQRSVKQEVSAALNRSAGENGLSAETSDDGSKWGHVKKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELIRGGGKCPLCRAPIVEVVRAYSIL 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2609 850 MobiDBLite consensus disorder prediction 432 597 - -
Aed1g2609 850 Pfam Zinc finger, C3HC4 type (RING finger) 795 842 - -
Aed1g2609 850 MobiDBLite consensus disorder prediction 52 78 - -
Aed1g2609 850 ProSiteProfiles Zinc finger RING-type profile. 798 837 IPR001841 -
Aed1g2609 850 MobiDBLite consensus disorder prediction 173 244 - -
Aed1g2609 850 SUPERFAMILY RING/U-box 797 843 - -
Aed1g2609 850 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 1 850 - -
Aed1g2609 850 MobiDBLite consensus disorder prediction 313 333 - -
Aed1g2609 850 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 779 848 IPR013083 -
Aed1g2609 850 MobiDBLite consensus disorder prediction 179 237 - -
Aed1g2609 850 MobiDBLite consensus disorder prediction 298 333 - -
Aed1g2609 850 MobiDBLite consensus disorder prediction 39 78 - -
Aed1g2609 850 Coils Coil 727 747 - -
Aed1g2609 850 MobiDBLite consensus disorder prediction 548 573 - -
Aed1g2609 850 MobiDBLite consensus disorder prediction 434 538 - -
Aed1g2609 850 MobiDBLite consensus disorder prediction 651 697 - -
Aed1g2609 850 CDD mRING-HC-C3HC5_NEU1 797 837 - -
Aed1g2609 850 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 850 - -
Aed1g2609 850 MobiDBLite consensus disorder prediction 668 683 - -
Aed1g2609 850 MobiDBLite consensus disorder prediction 125 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2609 Aed-Chr1 21720495 21727164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2609 798 844 C3H Transcription Factor Family AT3G06140 42.553 1.71e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2609 - - gmx:100805607 1533.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2609 1 21720495 21727164 Aed1g2609 1 21720495 21727164 ECH