Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2599 ATGAACTGTCTTCAGAATCTCCCTCGATTCCCTCTTTTGCCCTTCGAAACACTTGCTACTCGCCACCGCAAGAACCTTCTTCCCCTTTCCCTGGGAATCGTCAATAGTAATTCTCATCAGAATCGAACTATGACACTCAAGTGGCATTTGTCTTTCGCTCTTTCGCAGGCTGCTTCAGGCTCTATACCGAGTGCAGACACAAGTAATGCCGATGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAAAAGTCTGAGATATATAGTCATAACATGACAGAAGCCATGGGTGCTGTTTTGACTTATAGGCATGAATTAGGAATGAACTATAACTTCATCCGTCCAGACTTGATTGTGGGATCATGCCTACAGACTCCTGAGGATGTTGACAAGTTGCGTAGAATTGGAGTGAAAACTATATTTTGCTTACAACAAGATCCAGACCTGGAATATTTCGGAGTTGATATTAATGCCATACAAGAATATGCCAAGACATGCAATGACATTCAACACTTGCGTGCTGAGATAAGGGACTTTGATGCATTTGATCTCCGGAAGCGGCTTCCAGCTGTAGTTAGCAAATTATACAAGGCAATAAATTCCAACGGAGGTGTAACATATATACATTGCACTGCTGGACTTGGAAGAGCTCCAGCTGTTGCGTTGGCTTATATGTTTTGGGTTCTGGGTTATAAACTTAATGAAGCTCATACACTACTTCAGAGCAAAAGGTCGTGCTTTCCAAAATTGGATGCCATTAAAAGTGCAACAGCTGATATTCTTACAGGCCTCAGTAAGAAGCCTGTCACTTTGTCTTGGGAAGACAGCAATTGCTCTACCGTGGAAATTTCAGGACTTGATATTGGATGGGGGCAGAGAATACCCCTACATTTTGATGACAAAGAGGGTTCGTGGTTTCTCAAGAGGGAATTGCCTGAAGGACTCTATGAGTACAAGTACATTGTTGATGGGAAATGGACATGCAACACAGATGAGCTTGTAACTTCTCCCAACAAAGATGGCCATGTCAACAATTTTATTCAAGTCCTGGATGATACAAGCAGTGTTCGTGCCTCACTTCGGGAGAGATTAACTGGTGATGATCCTGATCTCACAACAGATGAACAGCTGAGAATAAAGGAGTTTCTTGAAGCTTGTCCTTGA 1161 0.4324 MNCLQNLPRFPLLPFETLATRHRKNLLPLSLGIVNSNSHQNRTMTLKWHLSFALSQAASGSIPSADTSNADEKEEEEEEEEEKSEIYSHNMTEAMGAVLTYRHELGMNYNFIRPDLIVGSCLQTPEDVDKLRRIGVKTIFCLQQDPDLEYFGVDINAIQEYAKTCNDIQHLRAEIRDFDAFDLRKRLPAVVSKLYKAINSNGGVTYIHCTAGLGRAPAVALAYMFWVLGYKLNEAHTLLQSKRSCFPKLDAIKSATADILTGLSKKPVTLSWEDSNCSTVEISGLDIGWGQRIPLHFDDKEGSWFLKRELPEGLYEYKYIVDGKWTCNTDELVTSPNKDGHVNNFIQVLDDTSSVRASLRERLTGDDPDLTTDEQLRIKEFLEACP 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2599 386 MobiDBLite consensus disorder prediction 60 86 - -
Aed1g2599 386 Gene3D Protein tyrosine phosphatase superfamily 101 381 IPR029021 -
Aed1g2599 386 PANTHER PHOSPHOGLUCAN PHOSPHATASE DSP4, CHLOROPLASTIC 1 385 IPR030079 GO:0005982|GO:0007623|GO:0019203
Aed1g2599 386 SMART dsp_5 108 258 IPR020422 GO:0006470|GO:0008138
Aed1g2599 386 CDD E_set_AMPKbeta_like_N 267 348 - -
Aed1g2599 386 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 185 243 IPR000387 GO:0016311|GO:0016791
Aed1g2599 386 SUPERFAMILY E set domains 266 349 IPR014756 -
Aed1g2599 386 Pfam Dual specificity phosphatase, catalytic domain 151 246 IPR000340 GO:0008138|GO:0016311
Aed1g2599 386 Pfam Glycogen recognition site of AMP-activated protein kinase 267 350 IPR032640 -
Aed1g2599 386 Gene3D Immunoglobulins 263 353 IPR013783 -
Aed1g2599 386 Coils Coil 70 90 - -
Aed1g2599 386 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 105 250 IPR029021 -
Aed1g2599 386 CDD DSP_laforin-like 107 254 IPR045204 GO:0019203|GO:0046838
Aed1g2599 386 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 1 385 - -
Aed1g2599 386 ProSiteProfiles Dual specificity protein phosphatase domain profile. 108 265 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2599 Aed-Chr1 21633497 21643990 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2599 107 385 Protein tyrosine phosphatase (PTP) family AT3G52180 72.043 5.07e-153 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2599 - - gmx:100804010 680.633