Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2598 ATGCAACCCACTTCAATCACTAACCTTCTTCTGCAACACTCACTCTTAATCTCCATGTTTTTGCTCCATTACACGCTCGTTCGTGCACATCTTAGTGGAAGGGGTAATGGCAATGCCACTCCCACTCGATGCAATGAGAGGGGTGATGACGAGGGCGTAGACACATTCGACCAAAATCTTTCAAAACCCCAAACAAAACCCTTCAACCCTGCGACGCCGTTTCTCTCTTTCCCTCTCCCCGGTGCCCCGCCGCCGCCACGTCCGTCGTCCGAAGAGACCGACGCTGTTTCTGGAGGCAAGATGGGTGAGACTCAAGTGAACGATGCTCTTCCAAAGAACAAGCCTTCCACTGAACAGGACGTTACTGATGAGCTAGCGCTGAGAATGAAGAAGTATCTCAGAGGAGAAGGTGCTAATTTGGAGGCTTTGAAGGATAAAAAGCTGAAGGGTCAACTAGTTGTTAGGGAAGATTTATATGGAAAGTCTGCAAAAGCCGCTGCTAAGGCTGAGAAGTGGCTTATGCCTAGTGAAGGAGGCTATCTGGAGGCTGAAGGCTTGGAGAAGACATGGCGGATCAAACAGGAGGCAATAGCTCGTGAAGTAGATATCTCAAGCTCAAGCAAACAATATGATATAATTTTACCAGAACTTGGTCCATACAATCTGGATTTTACTTCAAGTGGCCGGTATATGGCTGTGGGTGGTCGTAAGGGCCATTTGGGAATTGTGGACATGATAAATCTGAGCCTAGTTAGAGAGTTTCAGGTAAGGGAAACAGTGCGTGATGTTGCGTTCTTGCATAATGAGCTCTTTTTTGCTGCTGCCCAGAAAAAGTATCCATACATCTATAGTCGAGAAGGCACAGAGCTTCACTGCCTCAAGGAACATGGTCCAGTGCTAAGGCTTCAGTTTCTGGAAAACCACTTTCTCTTGGCTACAATCAACAAGTTTGGACAACTTCGTTATCAGGATGTTACAATGGGTTCCATGGTCGGTAATATTCGAACTCACTCAGGACGTACAAATGTGATGCAAGTGAACCCCTTCAATGGGGTTGTTTCTTTAGGTCACTCAGGTGGTACTGTTACCATGTGGAAGCCAACCAGTGCTTCTCCTCTTGTCAAGATGCTGTGTCATCAAGGGCCTGTCTCAGCGCTGGCATTTCATTCAAATGGCCACTTGATGGCCACTGCCGGGAAAGATAAAAAAATTAAGCTTTGGGACTTGAGGAAATTTGAGGTTCTTCAAACCTTACCAGGTCATGCAAATACTCTTGATTTTAGTCAAAAAGGCTTGCTTGCTTGCGGTAATGGTTCATTGATCCAGGTTCTGCGTGATGTTTCCGGTACACAGAATTATTCAAAGTACATGACTCATTCCATGGTGAAAGGTTATCAGATAGGAAAATTAGCATTTCGACCATATGAAGATGTTCTAGGCATAGGGCATTCCATGGGCTGGTCTAGTATTCTTATTCCCGGAGCAGGAGAACCCAACTTCGACTCATGGGTTGCAAACCCGTTTGAAACTTCTAAGCAGAGGAGAGAAAAGGAAATACGGTCTCTTCTTGATAAGCTTCCACCTGAGACTATCATGCTTGATCCCAGCAAGATCGGTACGGTGAAACCAAAGAAAGAGAGGAAGCCAACAAAACAAGAGAGGGAGGCTGAAACAGAAGCTGCCGTTGAAGCTGCTAAGGGCAAGAAACTGAAGAAGAAGACAAAAGGAAGAAACAAGCCAGGTAAAATGATACAGAAAAAGCTAGACGCAATTGCTACAGTGAAGAGGCCCTACTTGGAGGAGAAAATTCAAGAAGAGGAAAGCATATCAAGAAAGAAGCATAAAACTAGTGAGAGTGTTGAACTACCAAAATCTCTACAGCGGTTTGCTCGTAAAAAAGCATCATCATGA 1911 0.4521 MQPTSITNLLLQHSLLISMFLLHYTLVRAHLSGRGNGNATPTRCNERGDDEGVDTFDQNLSKPQTKPFNPATPFLSFPLPGAPPPPRPSSEETDAVSGGKMGETQVNDALPKNKPSTEQDVTDELALRMKKYLRGEGANLEALKDKKLKGQLVVREDLYGKSAKAAAKAEKWLMPSEGGYLEAEGLEKTWRIKQEAIAREVDISSSSKQYDIILPELGPYNLDFTSSGRYMAVGGRKGHLGIVDMINLSLVREFQVRETVRDVAFLHNELFFAAAQKKYPYIYSREGTELHCLKEHGPVLRLQFLENHFLLATINKFGQLRYQDVTMGSMVGNIRTHSGRTNVMQVNPFNGVVSLGHSGGTVTMWKPTSASPLVKMLCHQGPVSALAFHSNGHLMATAGKDKKIKLWDLRKFEVLQTLPGHANTLDFSQKGLLACGNGSLIQVLRDVSGTQNYSKYMTHSMVKGYQIGKLAFRPYEDVLGIGHSMGWSSILIPGAGEPNFDSWVANPFETSKQRREKEIRSLLDKLPPETIMLDPSKIGTVKPKKERKPTKQEREAETEAAVEAAKGKKLKKKTKGRNKPGKMIQKKLDAIATVKRPYLEEKIQEEESISRKKHKTSESVELPKSLQRFARKKASS 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2598 636 MobiDBLite consensus disorder prediction 603 636 - -
Aed1g2598 636 MobiDBLite consensus disorder prediction 57 71 - -
Aed1g2598 636 Pfam BING4CT (NUC141) domain 456 534 IPR012952 -
Aed1g2598 636 SMART WD40_4 205 244 IPR001680 GO:0005515
Aed1g2598 636 SMART WD40_4 247 284 IPR001680 GO:0005515
Aed1g2598 636 SMART WD40_4 327 366 IPR001680 GO:0005515
Aed1g2598 636 SMART WD40_4 369 408 IPR001680 GO:0005515
Aed1g2598 636 SMART WD40_4 411 445 IPR001680 GO:0005515
Aed1g2598 636 Gene3D - 220 484 IPR015943 GO:0005515
Aed1g2598 636 MobiDBLite consensus disorder prediction 32 120 - -
Aed1g2598 636 ProSiteProfiles Trp-Asp (WD) repeats profile. 376 417 IPR001680 GO:0005515
Aed1g2598 636 MobiDBLite consensus disorder prediction 603 628 - -
Aed1g2598 636 MobiDBLite consensus disorder prediction 73 90 - -
Aed1g2598 636 MobiDBLite consensus disorder prediction 533 586 - -
Aed1g2598 636 Pfam WD domain, G-beta repeat 378 408 IPR001680 GO:0005515
Aed1g2598 636 SUPERFAMILY WD40 repeat-like 216 483 IPR036322 GO:0005515
Aed1g2598 636 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 376 410 - -
Aed1g2598 636 PANTHER BNAANNG36350D PROTEIN 110 632 - -
Aed1g2598 636 MobiDBLite consensus disorder prediction 539 567 - -
Aed1g2598 636 SMART BING4CT_2 455 535 IPR012952 -
Aed1g2598 636 PANTHER WD-REPEAT PROTEIN BING4 110 632 IPR040315 -
Aed1g2598 636 ProSitePatterns Trp-Asp (WD) repeats signature. 395 409 IPR019775 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2598 218 431 U-box Gene Family AT2G33340 24.336 1.70e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2598 K14768 - gmx:100802940 941.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2598 1 21623631 21630378 Aed1g2598 1 21623631 21630378 ECH