Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2587 ATGGATCCTTTTGATGATGATCTTCTACCACTGGCTCCTCCTGCTGCACGCACTTGGCCGGGTGCCAAGTTTATTCCAAAGGCCAAGATTAAGTCACGACCTAGAGTAGGCAATTCGCCCGCAATTGCTGCTTCTGCTTCATCTAATATTGAGTTGCCTACTTCTTGCACAAATGACTTTCAGTCTTTTAAGTTTAATGATACTAGCTCTAGTATTCCATTCTCTGAAGACAATAAGAGCTTGGCAGCAGCAATTCTTTCCCTAAATGCTATGCATTCAGAGGATGCAGTTCATAATGGAACTAGAGATTGCCCTTCTAGTTTTGGTAAATCATCCGGAGAGGCTGCAGACATTTTTTCTGGGCTAGAATCCCCTGATGACTTTCTCACCCAACCTGCCATTGGAAAACTAGCTCTTCATTCTTTCAACGAGGAAAATTTTGTCACACCTGCTAATAGTTCTATTAACTCTTCTGGGGAATGTGATACTACCCAAGTTGAAAGCTGTCCTGAGTATCATTCTCCCCAAGATCCACTAAGCTTAAATGAATCTGCAGTCCTCAACAAGAATGATACTCACACTAACAATAGAAGGTCAGAAACAGAGGTGAAGGAAATCGTGGACTTGAATCCTGCCTGCCCAATTGATGATGTGTTTGATTATCAATCCATGAATTCTGGTGGAGATCCAACATCTGGAATTCTGGTGCATGAAGAGTTGACAAATGCTGCAGATAGTCCCACATTGGCTGATTTCTTGCATGCAGATTTTACAAAGGAAAAAGAAGATGCTAATAAGAGAAAAAGGGATTGCTCACCATCATGTTCTCTAAGGAAGAACAAATCTTCTATTGCTGGAGAGGAGGATAAAGGTGGTAAAACCTCAAGGCAACTGAGAAAACAAGAAGCTCGTAAACCTGCAAACAGCTCATTTAATGATGATGTTGAAGATAATAATGACCTTGACCCTCCTTATAATTATAATTCTAATGAAGATGAACTTCAAGAAAATGATGATGACTATGAAGTCGATTATTCATCCAAGAAGAAAAGAGTATCAACAAGTTCACAGAAGAAATCTGTGGCTAAAGGTGAAAAAACATCTCAAAAGCGTAAGAGGGCTAATGCTGATATAGAAAAAACTAAGGAACCTTCTAAAAAGTTCTCTCATTCAACCCGACGAACCAAAAGATGTGTGGACAAGGCTCTGCTTGAAATTCCTGAGGATGAACTTGATCGTCTAAACATACCTATTAAGGATATTATTTTACTTGAAGAACACAGGGAGCGGCTGGCGAAAAAAGAGGTGATGACTTCAAATATGTCTTCCACCAATCAAAGTGGTGGAGATTATCTTCATGAGGCTGGTTCTTATAATGAAGGGGAGTTCTCAAGTTCAGAAGATGGTAGAGGCCCATATGATGATCAAGCCAATGAAGGGATTACATCAACTTCCTGTTTAATCAATCACCAGTCTTTCATGGAAAAGTCACCTAGGGGAAAATGGTCAAAACAAGACACTGAACGGTTTTATGAGGCTGTTAGGGGGATAGGCACAGATTTTAATATGATAAAGGTCCTTTTCCCTGATAAAACACGCCATCAAATTAAGTTGAAGTTCAAGAATGAAGATCGGAAGCATCGTTCACGGTTAAATGATGCTGTATATAACCGTGCAAAAGATCACTCTCGTGATTTGTGGATTGAGCAAGTAAAACTAGCTTCCACCAAGGCAGAAGAAGACCCCGGTGGAAATGCCTCGGACTTCATGATGGAAGAGGAGGTTGTGGACAATGAAGATTCTGTGGCAGTTCATAGTCCAGAGCAATCTGATGACAGTGACGATGACTGTCAAAAATGGTCTCAGTATAAAAGTGCCTTATAG 1884 0.4045 MDPFDDDLLPLAPPAARTWPGAKFIPKAKIKSRPRVGNSPAIAASASSNIELPTSCTNDFQSFKFNDTSSSIPFSEDNKSLAAAILSLNAMHSEDAVHNGTRDCPSSFGKSSGEAADIFSGLESPDDFLTQPAIGKLALHSFNEENFVTPANSSINSSGECDTTQVESCPEYHSPQDPLSLNESAVLNKNDTHTNNRRSETEVKEIVDLNPACPIDDVFDYQSMNSGGDPTSGILVHEELTNAADSPTLADFLHADFTKEKEDANKRKRDCSPSCSLRKNKSSIAGEEDKGGKTSRQLRKQEARKPANSSFNDDVEDNNDLDPPYNYNSNEDELQENDDDYEVDYSSKKKRVSTSSQKKSVAKGEKTSQKRKRANADIEKTKEPSKKFSHSTRRTKRCVDKALLEIPEDELDRLNIPIKDIILLEEHRERLAKKEVMTSNMSSTNQSGGDYLHEAGSYNEGEFSSSEDGRGPYDDQANEGITSTSCLINHQSFMEKSPRGKWSKQDTERFYEAVRGIGTDFNMIKVLFPDKTRHQIKLKFKNEDRKHRSRLNDAVYNRAKDHSRDLWIEQVKLASTKAEEDPGGNASDFMMEEEVVDNEDSVAVHSPEQSDDSDDDCQKWSQYKSAL 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2587 627 MobiDBLite consensus disorder prediction 576 627 - -
Aed1g2587 627 MobiDBLite consensus disorder prediction 282 311 - -
Aed1g2587 627 CDD SANT 501 542 IPR001005 -
Aed1g2587 627 PANTHER TRANSCRIPTION FACTOR TFIIIB COMPONENT B'' HOMOLOG 21 600 - -
Aed1g2587 627 Gene3D - 502 565 - -
Aed1g2587 627 PANTHER RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR B 21 600 - -
Aed1g2587 627 SMART sant 498 546 IPR001005 -
Aed1g2587 627 MobiDBLite consensus disorder prediction 150 181 - -
Aed1g2587 627 MobiDBLite consensus disorder prediction 598 619 - -
Aed1g2587 627 SUPERFAMILY Homeodomain-like 500 547 IPR009057 -
Aed1g2587 627 MobiDBLite consensus disorder prediction 363 388 - -
Aed1g2587 627 MobiDBLite consensus disorder prediction 261 393 - -
Aed1g2587 627 Pfam Myb DNA-binding like 492 562 IPR039467 -
Aed1g2587 627 MobiDBLite consensus disorder prediction 261 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2587 Aed-Chr1 21497912 21503320 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aed1g2587 Myb_DNA-bind_7 5.3e-24 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2587 K15198 - gmx:100792788 813.913