Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2575 ATGATTTCTTCTGGAATCAACTTGGTGATGACTGTGATTGGGTTTGCGGTGAGCACCATGTTCATTGTTTTCGTCTGCACCAGACTCATATGTGCACGAATTCACCTGAATGCTGCGAGGAGATCATTTCCTATTGCCTCCAGATCCAATCTCAGCATGATGGAGCGGGGTTGCCATGGTCTTGAACGCGCAGCTGTAGCCAAATTTCCAACAAAGAAGTACAGTGACAAGTTTTTTGCTGCAGCAGAAATTTCACAATGCACAGTCTGCCTCTCAGAATACCAAGGCGAGGATATGCTGCGTATCCTCCCCTATTGCGGACACTCCTTCCATGTGACCTGCATAGACTTATGGCTGCAGCAGAATTCCACTTGTCCTGTTTGTCGAATATCGTTGCGCGAATTCCCCGAAAGAAAGCGGTTAATGCGGCCCTTGTTCAGCTCGGCTTTGCAGCCTCACTACGGCATAGAATCCTTTGACACTCACCATTACCACTGTATGATGTCTGATAATAATGGATTATCAATAAGAGACCCTGACAACCATGGGGTGAATCCTATAGAAGAAGATCATTTTCCATCTGAGGGTGGTGGAGCAGTTGCTATTGCTATTGCTATGGACAATATCACATGTATAAGTGAGGGTGACTTCATTAAAGATGAAGGAAAGAAGCATGTAGAGAGCCCATCAAACTTCCAGATTTGA 705 0.4539 MISSGINLVMTVIGFAVSTMFIVFVCTRLICARIHLNAARRSFPIASRSNLSMMERGCHGLERAAVAKFPTKKYSDKFFAAAEISQCTVCLSEYQGEDMLRILPYCGHSFHVTCIDLWLQQNSTCPVCRISLREFPERKRLMRPLFSSALQPHYGIESFDTHHYHCMMSDNNGLSIRDPDNHGVNPIEEDHFPSEGGGAVAIAIAMDNITCISEGDFIKDEGKKHVESPSNFQI 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2575 234 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Aed1g2575 234 CDD RING-H2_PA-TM-RING 86 129 - -
Aed1g2575 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 134 IPR013083 -
Aed1g2575 234 Pfam Ring finger domain 86 129 IPR001841 -
Aed1g2575 234 SUPERFAMILY RING/U-box 86 135 - -
Aed1g2575 234 PANTHER OS11G0150450 PROTEIN 1 231 - -
Aed1g2575 234 PANTHER OS11G0150450 PROTEIN 1 231 - -
Aed1g2575 234 SMART ring_2 87 128 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2575 Aed-Chr1 21391478 21394834 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2575 45 136 C3H Transcription Factor Family AT4G10150 42.391 1.81e-19 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2575 - - gmx:100794979 441.81