Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2565 ATGGAACTTCTCTCTGTGTTTGTCACACTCAGCAAATGTCAAACATTATCCTTTCCGAAACCAAAGGCAACCCAAATTCACGAACTTCCAATAAACATAAGAATACCCAACAAATTATATCATTCCAATCTTTCATCTTCTTCTTGTAATTGGTCCATTACTAGGGTATCAGCAACAACAACATACCCTTCCTTCAATCCTTCAACCACACAGAACCGCCACTGGATGGTGCTCATGGACACGCCTCCTCAAGGGCTCATTTCCAAGCCACGAGTCATTGATTATTACGTCCACACTCTACAAACACTTCTTGGCAGTGAGAAAGATGCTCAGATGTGTATATATGATGCTTCATGGGACACCCACTTCGGTTTTTGTTGTGACATTGATGAAGAAATATCCTCCCAGCTGCCCAGTTTGCCTGGTGTCTTGTTGGTTAGGCCTGACCCGGATTTCAACTCTTTGAAAAAAGACTATAGTTTATCAAGTGGTCAGGCAGGTCGCCCGTCAGGATTAACAACTAGAACCAATATGTTGTTTCCTGCTGGAAATTCAAAGCATTGGCTTGTTAGAATGGATAAACCAGGGGTTGAGGTTGTTACCAAGGCTCAGATTGTTGATTATTATGCTCAAATTTTGACCAAGGTCATGGGGAATGAGAAGGATGCACAAATGTGTATATATCACGTTTCCTGGAAAACAAACTTTGGTTTCTGCTGTGAACTTGATGTGAATTGTGCACAAGAGCTGGCTGGGGTGCTTGGCGTCTTATCAGTTCAGCCAGATAACAATTTTGAGTCTGAAAATAAGGATTATGCAGGTGGTAACTTAGAAAATAGTTGGAATGTGTCCAACTCTTCTGAAGCAAGTCAGGAAGCTCCCTTGAAAACAAAGAAACTTTTTGTAACAGGGCTATCCTTTTATACATCTGAGAAAACCTTGCGTGCAGCATTTGAAGGCTTTGGCGAGTTAGTTGAAGTTAAAGTTATTGTGGACAAAATTTCAAAAAGGTCCAAGGGTTATGCATTTGTTGAATACACCACAGAGGAGGCTGCAAGTGCAGCACTCAAAGAGATGAATGGCAAGATTATCAATGGCTGGATGATAGTAGTAGATGTTGCCAAGCCAAACCCACCAAGATACAACAGTAATCGTGCTGGATCATCAAGTTGA 1173 0.4152 MELLSVFVTLSKCQTLSFPKPKATQIHELPINIRIPNKLYHSNLSSSSCNWSITRVSATTTYPSFNPSTTQNRHWMVLMDTPPQGLISKPRVIDYYVHTLQTLLGSEKDAQMCIYDASWDTHFGFCCDIDEEISSQLPSLPGVLLVRPDPDFNSLKKDYSLSSGQAGRPSGLTTRTNMLFPAGNSKHWLVRMDKPGVEVVTKAQIVDYYAQILTKVMGNEKDAQMCIYHVSWKTNFGFCCELDVNCAQELAGVLGVLSVQPDNNFESENKDYAGGNLENSWNVSNSSEASQEAPLKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIVDKISKRSKGYAFVEYTTEEAASAALKEMNGKIINGWMIVVDVAKPNPPRYNSNRAGSSS 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2565 390 Gene3D - 269 390 IPR012677 -
Aed1g2565 390 SMART rrm1_1 299 372 IPR000504 GO:0003723
Aed1g2565 390 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 57 153 IPR037045 -
Aed1g2565 390 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 180 266 IPR037045 -
Aed1g2565 390 PANTHER ORGANELLE RRM DOMAIN-CONTAINING PROTEIN 1, CHLOROPLASTIC 45 388 - -
Aed1g2565 390 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 45 388 IPR039206 GO:0016554
Aed1g2565 390 SUPERFAMILY RNA-binding domain, RBD 286 387 IPR035979 GO:0003676
Aed1g2565 390 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 300 366 IPR000504 GO:0003723
Aed1g2565 390 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 298 376 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2565 Aed-Chr1 21321529 21324857 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2565 290 380 C2H2 Transcription Factor Family AT2G19380 32.967 1.57e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2565 - - gmx:100791652 704.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2565 1 21321529 21324857 Aed1g2565 1 21321529 21324857 ECH