Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2560 ATGCATCAAAGATTCTTGTTTCGTATATGCGACGCCCCGACCGCGATATTTTCCCGAGCCGTTCGCTTCAATGTCTCTTCTCTCTCTTTCTCTTCCCTCTTTGTTGGGAATTTCCTTTTTTTTTTTTCTTGCTTGGTTTACAAGTCTATTTTATTATTCCAAAATTTGATTCTAAGATCCCATATTCTTCGATTACAAGCTCTCTCTCTGCTTCCACAAAACGCCATTTCCTTATATATCTCTTCTCTTTCTCTCACACTTCTTCTCGTTTTTCTTCTTCTTCTTAACGCCACCGCCACCGCCACCGCCACCGCCACCACCACCACCTTGGCTTCCATGTATTTCTTCACCGAGAAAATGCAGCGTTTGAAGTTGGGCTTCCCTGACTACATCCAAACATTGGAAGAAGAGCGCCGTAAGATTCTGGTGTTCTCCAAAGAGCTTCCTCTCTCCTTGGAACTGGTCTCTCAAGCCATTGAAGCTTGCAAACAGCAATTGTCTGGCACCATGAGTGAGTATAATTTGAATGGCCACTCGGAGTGTTCGGAGCAGACGACATCAACTGAAGGGCCTGTTTTGGAGGAGTTTATTCCAATCAAGAAAAGGGCATCATCATCATCCCCTTGTTGTGATGAAGAGGATGAGGATGATGAGCAACATTCTCACAAGCAAAGGGTTTCAAATGAGAATAACAGTGATAAGAGGAAGTCAGACTGGCTTAGATCTGTCCAGTTGTGGAATCCAGACCCCCCAGCCGAGGAGGATGTGAGTAGGAAAGTGCCTGGGGTAGAATTGAAGAGAAGTGGAAATGGTGGTGGTGCTTTCCAGCCATTCCACAAGGAAGAAAGAGGTGCAAAGGAAACTGAATCATTGAGTAAAGCACCCTCTTCAACCCAGGTAGCTGCTGCTGCGAGTTCTAGCGCCGCTGTAGAACCCACAGCGGAAAAATCTCTGAATGAGGGACAGAGAAAGCAGCGTAGGTGCTGGTCTCAGGACTTGCATAAGCGCTTCTTGCATGCCCTTCAGCAGCTTGGGGGTGCAGATTCTGCCACACCAAAGCAAATCAGAGAGCTAATGAATGTTGATGGCCTCACAAATGATGAAGTCAAAAGCCATTTGCAGAAATACCGTTTGCACACTAGAAGGCCAAGTCCCATGGTTCACAACAGTTCCAATCCACAAGCAGCACCTTTTGTCCTTGTAGGTAACATTTTTGTCCAATCACCAGAATATGCAGCTGTAGCTGCTACCTCAACAGCATCAAGAGAAGTGGGCACAGTTGCAGCAGCACCTGCTGGAATTTATGCGCCAGTGGCCACACATCCTACAGCTGTTTCACACCCACCAGCTGGTTCAATTAAGAAGCTACAGTTTAAGAAAGTAAAGCTGTTTGAGCATTCAAATTCAGATGATAGGGCCAATCACAGTGAAGGAGCTGTTCATTCAAATTCCCCTACCTCCTCCTCCTCCACACATACTTCTACATCCCCTGGCTATTGA 1500 0.462 MHQRFLFRICDAPTAIFSRAVRFNVSSLSFSSLFVGNFLFFFSCLVYKSILLFQNLILRSHILRLQALSLLPQNAISLYISSLSLTLLLVFLLLLNATATATATATTTTLASMYFFTEKMQRLKLGFPDYIQTLEEERRKILVFSKELPLSLELVSQAIEACKQQLSGTMSEYNLNGHSECSEQTTSTEGPVLEEFIPIKKRASSSSPCCDEEDEDDEQHSHKQRVSNENNSDKRKSDWLRSVQLWNPDPPAEEDVSRKVPGVELKRSGNGGGAFQPFHKEERGAKETESLSKAPSSTQVAAAASSSAAVEPTAEKSLNEGQRKQRRCWSQDLHKRFLHALQQLGGADSATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRPSPMVHNSSNPQAAPFVLVGNIFVQSPEYAAVAATSTASREVGTVAAAPAGIYAPVATHPTAVSHPPAGSIKKLQFKKVKLFEHSNSDDRANHSEGAVHSNSPTSSSSTHTSTSPGY 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2560 499 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 321 381 IPR017930 -
Aed1g2560 499 MobiDBLite consensus disorder prediction 466 499 - -
Aed1g2560 499 MobiDBLite consensus disorder prediction 216 240 - -
Aed1g2560 499 Pfam Myb-like DNA-binding domain 326 377 IPR001005 -
Aed1g2560 499 MobiDBLite consensus disorder prediction 290 313 - -
Aed1g2560 499 Gene3D - 323 381 - -
Aed1g2560 499 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 113 497 - -
Aed1g2560 499 MobiDBLite consensus disorder prediction 478 499 - -
Aed1g2560 499 SUPERFAMILY Homeodomain-like 322 382 IPR009057 -
Aed1g2560 499 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 113 497 IPR044787 GO:0003700|GO:0006355
Aed1g2560 499 MobiDBLite consensus disorder prediction 202 326 - -
Aed1g2560 499 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 324 379 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2560 Aed-Chr1 21280231 21282718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2560 116 440 G2-like Transcription Factor Family AT1G68670 46.377 1.34e-75 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Aed1g2560 Myb_DNA-binding 4.3e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2560 - - gmx:100796683 629.402