Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aed1g2560 | ATGCATCAAAGATTCTTGTTTCGTATATGCGACGCCCCGACCGCGATATTTTCCCGAGCCGTTCGCTTCAATGTCTCTTCTCTCTCTTTCTCTTCCCTCTTTGTTGGGAATTTCCTTTTTTTTTTTTCTTGCTTGGTTTACAAGTCTATTTTATTATTCCAAAATTTGATTCTAAGATCCCATATTCTTCGATTACAAGCTCTCTCTCTGCTTCCACAAAACGCCATTTCCTTATATATCTCTTCTCTTTCTCTCACACTTCTTCTCGTTTTTCTTCTTCTTCTTAACGCCACCGCCACCGCCACCGCCACCGCCACCACCACCACCTTGGCTTCCATGTATTTCTTCACCGAGAAAATGCAGCGTTTGAAGTTGGGCTTCCCTGACTACATCCAAACATTGGAAGAAGAGCGCCGTAAGATTCTGGTGTTCTCCAAAGAGCTTCCTCTCTCCTTGGAACTGGTCTCTCAAGCCATTGAAGCTTGCAAACAGCAATTGTCTGGCACCATGAGTGAGTATAATTTGAATGGCCACTCGGAGTGTTCGGAGCAGACGACATCAACTGAAGGGCCTGTTTTGGAGGAGTTTATTCCAATCAAGAAAAGGGCATCATCATCATCCCCTTGTTGTGATGAAGAGGATGAGGATGATGAGCAACATTCTCACAAGCAAAGGGTTTCAAATGAGAATAACAGTGATAAGAGGAAGTCAGACTGGCTTAGATCTGTCCAGTTGTGGAATCCAGACCCCCCAGCCGAGGAGGATGTGAGTAGGAAAGTGCCTGGGGTAGAATTGAAGAGAAGTGGAAATGGTGGTGGTGCTTTCCAGCCATTCCACAAGGAAGAAAGAGGTGCAAAGGAAACTGAATCATTGAGTAAAGCACCCTCTTCAACCCAGGTAGCTGCTGCTGCGAGTTCTAGCGCCGCTGTAGAACCCACAGCGGAAAAATCTCTGAATGAGGGACAGAGAAAGCAGCGTAGGTGCTGGTCTCAGGACTTGCATAAGCGCTTCTTGCATGCCCTTCAGCAGCTTGGGGGTGCAGATTCTGCCACACCAAAGCAAATCAGAGAGCTAATGAATGTTGATGGCCTCACAAATGATGAAGTCAAAAGCCATTTGCAGAAATACCGTTTGCACACTAGAAGGCCAAGTCCCATGGTTCACAACAGTTCCAATCCACAAGCAGCACCTTTTGTCCTTGTAGGTAACATTTTTGTCCAATCACCAGAATATGCAGCTGTAGCTGCTACCTCAACAGCATCAAGAGAAGTGGGCACAGTTGCAGCAGCACCTGCTGGAATTTATGCGCCAGTGGCCACACATCCTACAGCTGTTTCACACCCACCAGCTGGTTCAATTAAGAAGCTACAGTTTAAGAAAGTAAAGCTGTTTGAGCATTCAAATTCAGATGATAGGGCCAATCACAGTGAAGGAGCTGTTCATTCAAATTCCCCTACCTCCTCCTCCTCCACACATACTTCTACATCCCCTGGCTATTGA | 1500 | 0.462 | MHQRFLFRICDAPTAIFSRAVRFNVSSLSFSSLFVGNFLFFFSCLVYKSILLFQNLILRSHILRLQALSLLPQNAISLYISSLSLTLLLVFLLLLNATATATATATTTTLASMYFFTEKMQRLKLGFPDYIQTLEEERRKILVFSKELPLSLELVSQAIEACKQQLSGTMSEYNLNGHSECSEQTTSTEGPVLEEFIPIKKRASSSSPCCDEEDEDDEQHSHKQRVSNENNSDKRKSDWLRSVQLWNPDPPAEEDVSRKVPGVELKRSGNGGGAFQPFHKEERGAKETESLSKAPSSTQVAAAASSSAAVEPTAEKSLNEGQRKQRRCWSQDLHKRFLHALQQLGGADSATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRPSPMVHNSSNPQAAPFVLVGNIFVQSPEYAAVAATSTASREVGTVAAAPAGIYAPVATHPTAVSHPPAGSIKKLQFKKVKLFEHSNSDDRANHSEGAVHSNSPTSSSSTHTSTSPGY | 499 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aed1g2560 | 499 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 321 | 381 | IPR017930 | - | |
Aed1g2560 | 499 | MobiDBLite | consensus disorder prediction | 466 | 499 | - | - | |
Aed1g2560 | 499 | MobiDBLite | consensus disorder prediction | 216 | 240 | - | - | |
Aed1g2560 | 499 | Pfam | Myb-like DNA-binding domain | 326 | 377 | IPR001005 | - | |
Aed1g2560 | 499 | MobiDBLite | consensus disorder prediction | 290 | 313 | - | - | |
Aed1g2560 | 499 | Gene3D | - | 323 | 381 | - | - | |
Aed1g2560 | 499 | PANTHER | MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN | 113 | 497 | - | - | |
Aed1g2560 | 499 | MobiDBLite | consensus disorder prediction | 478 | 499 | - | - | |
Aed1g2560 | 499 | SUPERFAMILY | Homeodomain-like | 322 | 382 | IPR009057 | - | |
Aed1g2560 | 499 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR | 113 | 497 | IPR044787 | GO:0003700|GO:0006355 | |
Aed1g2560 | 499 | MobiDBLite | consensus disorder prediction | 202 | 326 | - | - | |
Aed1g2560 | 499 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 324 | 379 | IPR006447 | GO:0003677 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aed1g2560 | Aed-Chr1 | 21280231 | 21282718 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Aed1g2560 | 116 | 440 | G2-like Transcription Factor Family | AT1G68670 | 46.377 | 1.34e-75 | 240 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | GARP-G2-like | Aed1g2560 | Myb_DNA-binding | 4.3e-06 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aed1g2560 | - | - | gmx:100796683 | 629.402 |