Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2559 ATGCAGAAAACATACTCTTTCTCCTGCATATCCTCTTCTTGTGGCAGTGATAGTGCCTGCTGCTTAGAAGCTGACAATGAAGATTCCATTTCCCTCTCCCTTGCCCCTCCTAGCCACCACCACAAATTTCCCAAGTCCAAACTCTCTAATATTAACCCAAAAAACCACTCTTCTACTATGCAGCAGCAAAACCCTAGCTCCGATGATGTCGACCTGAGTGCTGTAACTGTTGCCCTCCACATTGGCCTTCCCACCACCAAACCTTCTTCCACTCCAATTCATCATGGTCGTTATTGGATCCCTACTCCTCAACAAATCCTCATCGGACCCACTCAGTTCTCTTGCACTGTCTGTAACAAAACCTTCAATCGCTTCAACAACATGCAGATGCATATGTGGGGACATGGATCGCAGTATAGGAAAGGAGCGGAGTCACTGAGAGGGGCGAAAGCAGGTTCTTCAATGCTGAGGCTACCCTGCTATTGCTGTGAAGAGGGTTGCAAGAACAACATAAACTATCCAAGGTCAAAGCCACTGAAGGATTTCAGGACACTCCAAACACACTACAAGAGGAAGCACGGAGGGAAGCCATTCGAGTGTAGGAAGTGTCACAAGGCATTTGCAGTGAGAGGGGATTGGAGAACACACGAGAAGAATTGTGGGAAGCTTTGGTTCTGTGTCTGTGGTTCTGATTTCAAGCACAAGAGATCCCTTAAGGATCATGTCCGTGCATTCGGCAATGGCCATGCTCCTCACACCTTGAGTGAAGAAAGAGGGAATGAATTAGGTGGAGATATTCATAATGATGACAATGAAGTGGTTGTTTTTACTTTCAAATAA 840 0.4619 MQKTYSFSCISSSCGSDSACCLEADNEDSISLSLAPPSHHHKFPKSKLSNINPKNHSSTMQQQNPSSDDVDLSAVTVALHIGLPTTKPSSTPIHHGRYWIPTPQQILIGPTQFSCTVCNKTFNRFNNMQMHMWGHGSQYRKGAESLRGAKAGSSMLRLPCYCCEEGCKNNINYPRSKPLKDFRTLQTHYKRKHGGKPFECRKCHKAFAVRGDWRTHEKNCGKLWFCVCGSDFKHKRSLKDHVRAFGNGHAPHTLSEERGNELGGDIHNDDNEVVVFTFK 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2559 279 ProSitePatterns Zinc finger C2H2 type domain signature. 115 135 IPR013087 -
Aed1g2559 279 SUPERFAMILY beta-beta-alpha zinc fingers 92 134 IPR036236 -
Aed1g2559 279 PANTHER ZINC FINGER PROTEIN WIP2 1 270 IPR043584 GO:0003700|GO:0010468
Aed1g2559 279 SUPERFAMILY beta-beta-alpha zinc fingers 183 218 IPR036236 -
Aed1g2559 279 SMART c2h2final6 161 193 IPR013087 -
Aed1g2559 279 SMART c2h2final6 113 135 IPR013087 -
Aed1g2559 279 SMART c2h2final6 198 218 IPR013087 -
Aed1g2559 279 MobiDBLite consensus disorder prediction 34 68 - -
Aed1g2559 279 PANTHER ZINC FINGER PROTEIN WIP6 1 270 - -
Aed1g2559 279 Gene3D Classic Zinc Finger 112 135 - -
Aed1g2559 279 Gene3D Classic Zinc Finger 153 247 - -
Aed1g2559 279 MobiDBLite consensus disorder prediction 48 68 - -
Aed1g2559 279 ProSiteProfiles Zinc finger C2H2 type domain profile. 113 140 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2559 Aed-Chr1 21272338 21273401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2559 24 257 C2H2 Transcription Factor Family AT1G13290 66.532 5.18e-113 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed1g2559 zf-C2H2_6 0.00065 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2559 - - gmx:100788243 466.077