Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2558 ATGGATGGAGGCAGTGTCACAGACGAAACCACCACATCCACCGATTCTCTCTCCGTTCCGCCTCCTCTCAGCCGCGTCGGCAGCGGCGCCAGCGTAGTCGTCGATCCCGACGGTTACGGTGTTTCTGGCGAGGCTGAATCCCGGAAACTCCCGTCGTCGAAATACAAAGGCGTGGTGCCTCAACCGAACGGTCGCTGGGGAGCTCAGATTTACGAGAAGCACCAGCGCGTGTGGCTCGGAACATTCAACGAGGAAGACGAAGCCGCCAGAGCCTACGACATCGCCGCGCAGCGTTTCCGCGGCCGCGATGCCGTCACGAACTTTAAGCCTCCCCCCGCCGCCGCCGGCGACGATGCCGAATCCGAGTTCCTCAACGCGCATTCCAAGTTCGAGATCGTCGACATGCTCCGCAAGCACACCTACGACGACGAGCTCCAGCAGAGCACACGCGGCGGTAGACTCCGCCGCAACGCCGATACCGCGTCGAGCGGCGCGTGCGATGCGAAGGCGCGTGAGCAGTTATTCGAGAAAACGGTTACGCCAAGCGACGTCGGGAAGCTGAATCGATTAGTGATACCGAAGCAGCACGCGGAGAAGCACTTTCCGTTGAGCGGAGGTGGCGGATCCGTCGACGGAACCTCGGCGGCGGCGAAGGGAGTTCTGTTGAACTTCGAGGACGTTGGAGGGAAAGTGTGGCGGTTTCGTTACTCATATTGGAACAGTAGCCAGAGCTACGTGCTTACCAAAGGATGGAGCCGATTCGTGAAGGAGAAGAATCTTCGAGCCGGTGATGCGGTTCAGTTCTTCAAGTCGACCGGACCGGACCGGCAGCTATATATAGACTGCAAGGCGAGGAGTAGTGGTGAGGTTATTATGAATAATGCTGGCGGTTTGTTTATTCCGGTTGTTGAACCGGTTCAGATGGTTCGACTTTTCGGGGTCAACCTTTTGAAACTACCCGTACCCAGTTCGGATGGTGTCGAGGTTGGCTGGGACGGGAAACGGAAAGAGATGGAACTGTTTGCTTTCGAATGTAGCAAGAAGTTAAAAGTAATTGGAGCTTTGTAA 1068 0.5693 MDGGSVTDETTTSTDSLSVPPPLSRVGSGASVVVDPDGYGVSGEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAQRFRGRDAVTNFKPPPAAAGDDAESEFLNAHSKFEIVDMLRKHTYDDELQQSTRGGRLRRNADTASSGACDAKAREQLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLSGGGGSVDGTSAAAKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDAVQFFKSTGPDRQLYIDCKARSSGEVIMNNAGGLFIPVVEPVQMVRLFGVNLLKLPVPSSDGVEVGWDGKRKEMELFAFECSKKLKVIGAL 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2558 355 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 355 IPR044800 GO:0003700
Aed1g2558 355 CDD AP2 53 108 IPR001471 GO:0003700|GO:0006355
Aed1g2558 355 ProSiteProfiles B3 DNA-binding domain profile. 175 286 IPR003340 GO:0003677
Aed1g2558 355 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 1 355 - -
Aed1g2558 355 SUPERFAMILY DNA-binding domain 53 109 IPR016177 GO:0003677
Aed1g2558 355 SMART rav1_2 54 115 IPR001471 GO:0003700|GO:0006355
Aed1g2558 355 ProSiteProfiles AP2/ERF domain profile. 54 109 IPR001471 GO:0003700|GO:0006355
Aed1g2558 355 Pfam B3 DNA binding domain 175 269 IPR003340 GO:0003677
Aed1g2558 355 MobiDBLite consensus disorder prediction 1 56 - -
Aed1g2558 355 Pfam AP2 domain 53 101 IPR001471 GO:0003700|GO:0006355
Aed1g2558 355 Gene3D - 163 293 IPR015300 -
Aed1g2558 355 SMART B3_2 175 285 IPR003340 GO:0003677
Aed1g2558 355 MobiDBLite consensus disorder prediction 1 21 - -
Aed1g2558 355 CDD B3_DNA 174 280 IPR003340 GO:0003677
Aed1g2558 355 Gene3D AP2/ERF domain 53 110 IPR036955 GO:0003700|GO:0006355
Aed1g2558 355 SUPERFAMILY DNA-binding pseudobarrel domain 173 283 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2558 Aed-Chr1 21262234 21263301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2558 5 355 B3 DNA Binding Superfamily AT1G25560 59.737 1.19e-138 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Aed1g2558 B3 4.7e-26 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2558 K09287 - gmx:732601 586.645