Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2554 ATGGCTGGACCATCGTGGTTGGTGGACAAAAATAGAATTGCAACCAAGATAAAGAGTGCCTCTGGAGCATGTGGTAAAGTTATTTGGAAAAGCAATCCTACCAGAGGTTGCCCAAAATGTCATCATGTTATTGACAACAGTGATGTAGCACAAGAGTGGCCTGGACTACCTAAAGGCGTTAAATTTGATCCATCTGATCAAGAGATAATGTGGCACTTGCTTGCAAAAGTTGGTGCTGGAAATTCAAAACCTCACCCTTTCATTGATGAATTTATCACTACTCTTGAAGTGGATGATGGGATTTGTTACACTCATCCTCAACATTTACCAGGTGTCAAGCAAGATGGAAGTGCTTCTCACTTTTTCCATCAAGCAATCAAGGCTTATAATACTGGCAGTCGAAAGCGTCGAAAAATATGTGGTCAGGATTTTGGTGATGTTCGCTGGCACAAGACTGGAAGGACTAAACCTGTCATCTTGAATGGGGTTCAGAAAGGCTGTAAAAAGATAATGGTCCTGTATATAAGCCCTGTGAAAGGTGGAAAACCTGAGAAAGCTAATTGGGTTATGCACCAATATCATCTAGGAACAGAAGAGGATGAAAAAGATGGGGAGTATGTTATCTCTAAAGTGTTTTGCCAGCAGCAGCAAGTCAAATTTGGTGAAAAAGATGACCAGGATATTTCTGAAATCACTGAAGCAACTACGGTTAAAGTGGATCCAGTCACTCCCAAATCTGTGACTCCCGAACCTCCTCGTATTGAAAAGCGATGTTCAAATCTGGACGTAGGTCAAGAATCACATCATATTCCTCAGCATCCTCAGATGGATTGTGCAGATGACCTTCAGGCTGATTTTGAAGATCTTGCAAAAGATGATGTATTGATTGTAGAAACTCAAAATAATGAAGGGATATATAATATAGAAAACAATGCTGAGGAAGACTCGAAATGGTGGGATAGTGAGTCACAGAATCTGTTGAGTTCACAACAACTTGCCGAAGCATTGATCTTGTGTGATGATCTCCTTCAAAGCCAGTCCCCCAAGAGGGATGGGGAAAATGACAAGAAACGACCCAGTCTTTCTGTTTATGCTGATCTAGGATCAGAGCATCTGAAGAAAGATATTGAGGAGTGTCAAAATCTTGTCCTTGACACTGCAAATGTAGACCCTGAGACACCACCTTCAGAATTTCGACTAAGTCAGCTGGATTTCGGTTCACAGGATAGCTTTGTTTCCTGGTGTGCCAGCAAAGCAATGGACTAA 1266 0.4163 MAGPSWLVDKNRIATKIKSASGACGKVIWKSNPTRGCPKCHHVIDNSDVAQEWPGLPKGVKFDPSDQEIMWHLLAKVGAGNSKPHPFIDEFITTLEVDDGICYTHPQHLPGVKQDGSASHFFHQAIKAYNTGSRKRRKICGQDFGDVRWHKTGRTKPVILNGVQKGCKKIMVLYISPVKGGKPEKANWVMHQYHLGTEEDEKDGEYVISKVFCQQQQVKFGEKDDQDISEITEATTVKVDPVTPKSVTPEPPRIEKRCSNLDVGQESHHIPQHPQMDCADDLQADFEDLAKDDVLIVETQNNEGIYNIENNAEEDSKWWDSESQNLLSSQQLAEALILCDDLLQSQSPKRDGENDKKRPSLSVYADLGSEHLKKDIEECQNLVLDTANVDPETPPSEFRLSQLDFGSQDSFVSWCASKAMD 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2554 421 SUPERFAMILY NAC domain 41 214 IPR036093 GO:0003677|GO:0006355
Aed1g2554 421 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 2 415 IPR044799 GO:0003700
Aed1g2554 421 PANTHER SUPPRESSOR OF GAMMA RESPONSE 1 2 415 - -
Aed1g2554 421 Pfam No apical meristem (NAM) protein 57 195 IPR003441 GO:0003677|GO:0006355
Aed1g2554 421 Gene3D NAC domain 65 219 IPR036093 GO:0003677|GO:0006355
Aed1g2554 421 ProSiteProfiles NAC domain profile. 56 214 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2554 Aed-Chr1 21228029 21232784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2554 28 221 NAC Transcription Factor Family AT1G28470 55.000 4.86e-70 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aed1g2554 NAM 8.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2554 - - gmx:100787702 792.727