Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2551 ATGGCGGGAGGGAAGGCGAAGAAGGAAAAGGGGAAACCCCAGCAGCAGCACATGCCTTACCAGGGCGGAATATCGTTCCACAAGTCGAAGGGTCAGCACATTCTCAAGAACCCAATGCTCGTCGACTCCATAGTGCTGAAAGTCAAAGCCACCGATGTCATCCTCGAAATCGGTCCCGGCACCGGAAACTTGACCAAGAAGCTTCTCGAAGCCGGCAAGAAGGTTATTGCTGTCGAGATTGACCCCCGCATGACAGATAAAGCATCATTGCTAGCAGAAGTGATTCAGCATGTGAAGGAGCTGAAGCGTCAAACCTCACTGATAGCAGAATCGAGTCCGGTTCCAACGGAGGCTGATGAGTTAACGGTAGTGGACGAAGCTGATGAAGATGGAAACTCTGTGATCAAAGCCTCGTTGTGCTGCGAAGATAGGTCAGATCTGTTCCCTGAACTCATCAAGACCTTGAAAGCGTTGAGGCTTAGAACCCTTAAAGCTGAGATCACAACGCTGGGAGGGCGCGTGAAGAACGTATTGTTCATCACTGGAGAAGAAGCAGACTCGAGCAGTGGCAGTGGAAGCAGCGAGGAACATAGCCAGCAGCAGCAACACCACTGCATTAGCTCAATACAAGAAGCGCTTAAAGCAGTGATGGAGAAGAGCGTTGGGGATGAGTCTGCTTCTGCAAATATTAAGAGGCAAAGGACCAATATTATATCAATGTCCTAG 726 0.5 MAGGKAKKEKGKPQQQHMPYQGGISFHKSKGQHILKNPMLVDSIVLKVKATDVILEIGPGTGNLTKKLLEAGKKVIAVEIDPRMTDKASLLAEVIQHVKELKRQTSLIAESSPVPTEADELTVVDEADEDGNSVIKASLCCEDRSDLFPELIKTLKALRLRTLKAEITTLGGRVKNVLFITGEEADSSSGSGSSEEHSQQQQHHCISSIQEALKAVMEKSVGDESASANIKRQRTNIISMS 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2551 241 CDD AdoMet_MTases 54 88 - -
Aed1g2551 241 ProSitePatterns Ribosomal RNA adenine dimethylases signature. 54 81 IPR020596 GO:0000154|GO:0000179|GO:0008649
Aed1g2551 241 Gene3D Vaccinia Virus protein VP39 6 110 IPR029063 -
Aed1g2551 241 MobiDBLite consensus disorder prediction 1 20 - -
Aed1g2551 241 PANTHER TRANSCRIPTION FACTOR BHLH30 85 239 - -
Aed1g2551 241 PANTHER TRANSCRIPTION FACTOR BHLH30 85 239 IPR045847 GO:0003700|GO:0006355
Aed1g2551 241 CDD ACT_UUR-ACR-like 138 184 - -
Aed1g2551 241 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 21 90 IPR029063 -
Aed1g2551 241 Pfam Ribosomal RNA adenine dimethylase 25 87 IPR001737 -
Aed1g2551 241 MobiDBLite consensus disorder prediction 185 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2551 Aed-Chr1 21192370 21208114 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2551 85 234 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 64.935 5.26e-55 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2551 - - pvu:PHAVU_007G101900g 236.113