Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2546 ATGGCGGGAGGGAAGGCGAAGAAGGAAAAGGGGAAACCCCAGCAGCAGCACATGCCTTACCAGGGCGGAATATCGTTCCACAAGTCGAAGGGTCAGCACATTCTCAAGAACCCAATGCTCGTCGACTCCATAGTGCTGAAAGTCAAAGCCACCGATGTCATCCTCGAAATCGGTCCCGGCACCGGAAACTTGACCAAGAAGCTTCTCGAAGCCGGCAAGAAGGTTATTGCTGTCGAGATTGACCCCGCGCATGCATGTGGAGGAGCTGAAGCGTCAAACCTCACTGATAGCAGGGAATCGAGTCCGGTTCCAACCGAGGCTGATGAGTTAACGGTAGTGGACGAAGCTGATGAAGATGGAAACTCTGTGATCAAAGCCTCGTTGTGCTGCGAAGATAGGTCAGATCTGTTCCCTGAACTCATCAAGACCTTGAAAGCGTTGAGGCTTAGAACCCCTTCAAAGCTGAGATCACAACGCTGGGGAGGGCGCGTGAAGAACGTATTGTTCATCACTGGAGAAGAAGCAGACTCGAGCAGTGGCAGTGGAAGCAGCGAGGAACATAGCCAGCAGCAGCAACACCATGCATTAGCTCAATACAAGAAGCGCTTAAAGCAGTGA 618 0.5227 MAGGKAKKEKGKPQQQHMPYQGGISFHKSKGQHILKNPMLVDSIVLKVKATDVILEIGPGTGNLTKKLLEAGKKVIAVEIDPAHACGGAEASNLTDSRESSPVPTEADELTVVDEADEDGNSVIKASLCCEDRSDLFPELIKTLKALRLRTPSKLRSQRWGGRVKNVLFITGEEADSSSGSGSSEEHSQQQQHHALAQYKKRLKQ 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2546 205 PANTHER TRANSCRIPTION FACTOR BHLH30 97 204 IPR045847 GO:0003700|GO:0006355
Aed1g2546 205 PANTHER TRANSCRIPTION FACTOR BHLH30 97 204 - -
Aed1g2546 205 CDD AdoMet_MTases 54 82 - -
Aed1g2546 205 ProSitePatterns Ribosomal RNA adenine dimethylases signature. 54 81 IPR020596 GO:0000154|GO:0000179|GO:0008649
Aed1g2546 205 Gene3D Vaccinia Virus protein VP39 6 172 IPR029063 -
Aed1g2546 205 MobiDBLite consensus disorder prediction 1 20 - -
Aed1g2546 205 MobiDBLite consensus disorder prediction 171 205 - -
Aed1g2546 205 MobiDBLite consensus disorder prediction 87 106 - -
Aed1g2546 205 Pfam Ribosomal RNA adenine dimethylase 25 82 IPR001737 -
Aed1g2546 205 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 21 83 IPR029063 -
Aed1g2546 205 ProSiteProfiles rRNA adenine N(6)-methyltransferase family profile. 26 205 IPR001737 -
Aed1g2546 205 MobiDBLite consensus disorder prediction 172 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2546 Aed-Chr1 21113750 21129017 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2546 99 171 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 63.158 9.96e-23 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2546 K14191 - gmx:100786901 144.05