Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2538 ATGATGCCCCCTCAACAAGAAACCACTATTGCACCAAACATTAATCCAGCCATCACAACCCGATCACCAGAGAGTAGCTCGGTCCACCATGAATCTGAGGGTTCTTCTAACTCTAACAAAATCAAACCAAGTTTGGAATTAGATCATCATCATCATCATAATGATAATGGCGTTCCCGCGCAGCATCACGCTCAGCCAACACCACCACCACCACCACAAAGATTTTCCGTTCTTCACCAATCCTTGCGCCCTATTACCCTCAAATTTGAAGACGTATCCTACTCTATAAGCTTCGAAAGCCAGAAGAAGAAGGGTTGTGTCTTACGTAAAGAGTCAAAGCTAAGCAGAAAAGTCCTCACGGGCGTGACCGGAGTAGCCAACCCGGGCGAGTTAACGGCAATGCTGGGTCCCTCCGGAAGCGGCAAGACGACACTCCTAACCGCCCTGGCCGGAAGACTCGCCGGAAAAGTCTCCGGCACCATAACCTACAACGGCCACACCGACCCCACCTTCGTGAAACGCAGGGTCGGGTTCGTGCCCCAAGACGACGTCCTCTACCCTCACCTCACGGTGTTGGAGACCCTCACCTACGCAGCGCTGTTGAGGCTTCCGAAGAGTTTGAGCAGAGAAGAGAAGAAGGAGCACGCGGAGATGGTGATCGCGGATCTCGGCCTCACACGGTGTCGTAACAGCCCGGTCGGAGGCTGCATGGCTCTGTTCCGCGGCATTTCGGGAGGGGAGCGGAAACGGGTCAGTATCGGGCAGGAGATGTTGGTCAACCCGAGTTTGTTGTTCGTTGACGAGCCCACTTCGGGCTTGGACTCCACCACAGCCCAACTTATCGTCTCTGTGCTCCGCGGCCTCGCCCGGGCGGGCCGCACCGTTGTCGCCACCATCCACCAGCCCTCCAGCCGGTTGTATAGGATGTTTGATAAGGTGATCGTGTTGTCGGACGGAAACCCGATTTATAGCGGGCAAGCGGGTCGGGTCATGGACTATCTTGGATCCGTTGGGTATGCCCCGGCTTTCAACTTCATGAACCCGGCAGATTTCCTACTTGACCTTGCTAATGGCATAGTTGCTGATGTCAAACATGATGATCAGATAGACCACCATGAGGATCAAGCTTCGGTCAAACAGTCCCTAATTTCATCTTTTAAGAAGAACTTATATCCTGCTCTTAAAGAAGACATTCATCAAAACAACAGTGATCCGTTGGCTTTTACATCAGGTACACCAAGACGTTCGGATAACCAATGGACCTCTAGCTGGTGGGAGCAATTCAGGGTGCTTCTTAAGAGGGGTTTACAAGAGAGGAGGCATGAATCTTTTTCTGGCTTAAGAATTTTCCAAGTCTTGTCTGTGTCCATTCTCTCAGGACTTCTGTGGTGGCACTCTGATCCTGCACATGTACAAGATCAGAGGCCAATGCTAACAAAAGAAAGATCATCAGGGATGTACAAACTCTCCTCATACTATGTTTCCAGAATGGTGGGAGATTTACCAATGGAGCTAGTGCTTCCTACCATCTTTGTAACAATCTCATACTGGATGGGGGGTCTCAAGCCTTCAATGGTCACATTTGTGTTAACCCTCTTGATCATGCTTTTCAATGTGCTAGTCTCTCAAGGCATAGGGTTAGCACTTGGGGCCATTCTCATGGATGTGAAGCAGGCCACAACTCTAGCCTCGGTGACCATGCTGGTGTTTCTCTTGGCTGGTGGCTACTACATTCAGCAAATGCCTTCTTTCATTGCTTGGTTGCAGTACATTTCTTTCAGCCACTACTGCTATAAGCTACTGGTAGGAGTCCAGTATTCAATAAATGAGGTGTACGAGTGTGGACCAGGGTTGCATTGTAGGGTAAGAGATTTTCCTGCCATAAAGTGTTTAGGGCTTGATGATACTATGTGGGGAGATGTGGCAGCATTGACTGTTATGTTGATTGGATACAGAGTTGTAGCATATCTAGCTTTGAGGATGGGGCAGCCTCACTGA 1998 0.4995 MMPPQQETTIAPNINPAITTRSPESSSVHHESEGSSNSNKIKPSLELDHHHHHNDNGVPAQHHAQPTPPPPPQRFSVLHQSLRPITLKFEDVSYSISFESQKKKGCVLRKESKLSRKVLTGVTGVANPGELTAMLGPSGSGKTTLLTALAGRLAGKVSGTITYNGHTDPTFVKRRVGFVPQDDVLYPHLTVLETLTYAALLRLPKSLSREEKKEHAEMVIADLGLTRCRNSPVGGCMALFRGISGGERKRVSIGQEMLVNPSLLFVDEPTSGLDSTTAQLIVSVLRGLARAGRTVVATIHQPSSRLYRMFDKVIVLSDGNPIYSGQAGRVMDYLGSVGYAPAFNFMNPADFLLDLANGIVADVKHDDQIDHHEDQASVKQSLISSFKKNLYPALKEDIHQNNSDPLAFTSGTPRRSDNQWTSSWWEQFRVLLKRGLQERRHESFSGLRIFQVLSVSILSGLLWWHSDPAHVQDQRPMLTKERSSGMYKLSSYYVSRMVGDLPMELVLPTIFVTISYWMGGLKPSMVTFVLTLLIMLFNVLVSQGIGLALGAILMDVKQATTLASVTMLVFLLAGGYYIQQMPSFIAWLQYISFSHYCYKLLVGVQYSINEVYECGPGLHCRVRDFPAIKCLGLDDTMWGDVAALTVMLIGYRVVAYLALRMGQPH 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2538 665 PANTHER ABC TRANSPORTER G FAMILY MEMBER 21 61 474 - -
Aed1g2538 665 Pfam ABC-2 type transporter 300 364 IPR043926 GO:0140359
Aed1g2538 665 PANTHER ABC TRANSPORTER G FAMILY MEMBER 21 474 662 - -
Aed1g2538 665 MobiDBLite consensus disorder prediction 1 42 - -
Aed1g2538 665 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 61 474 - -
Aed1g2538 665 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 474 662 - -
Aed1g2538 665 CDD ABCG_EPDR 84 325 - -
Aed1g2538 665 Gene3D - 79 339 IPR027417 -
Aed1g2538 665 SMART AAA_5 128 320 IPR003593 -
Aed1g2538 665 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 87 343 IPR003439 GO:0005524
Aed1g2538 665 MobiDBLite consensus disorder prediction 43 58 - -
Aed1g2538 665 Pfam ABC transporter 122 271 IPR003439 GO:0005524
Aed1g2538 665 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 116 335 IPR027417 -
Aed1g2538 665 MobiDBLite consensus disorder prediction 1 76 - -
Aed1g2538 665 ProSitePatterns ABC transporters family signature. 243 257 IPR017871 GO:0005524
Aed1g2538 665 Pfam ABC-2 type transporter 473 606 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2538 Aed-Chr1 21054948 21059219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2538 126 325 Calmodulin-binding Proteins AT2G36910 24.757 6.02e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2538 K05681 - gmx:100792991 1167.53