Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2533 ATGGGAAGAAAGGCCAATTGTGACAATCAATATGCCATTAACAGAGGTCCTTGGTCTGCTGAAGAAGACCAAATTCTTATCAACCACGTTCAAGTCCACGGAGAAGGAAAATGGAGAGAGCTTTCTAAAAGAGCAGGCTTGAAAAGATGTGGGAAGAGTTGTAGACTCCGATGGCTGAATTATCTCAAGCCAGATATCAAGAGAGGAAACATTTCTTCTGACGAAGAAGATCTCATTATCAGACTACATAAGCTCTTAGGGAATAGATGGTCTCTAATTGCGGGACGCTTACCAGGGCGAACAGACAATGAAATTAAGAACTATTGGAATACTTATTTGAGAAAGAAGGTAGAGCAAAAGCATGAGAAAATTCCTAGCCATAACAACAACGTTCCTATCAAATTAAGAAATGATGAATCTCCGGGGTGCTCAAAAAATTCCTTGGATAATGTTCTTGATCCTACAAAATCAATGAGGTGTACTACCAAGGTTATGATGCCGGTCAACGGTTCAGTCAACACAATGGATTTGATTACAACAAGCTGGGACAATCATAACCCTTCTGCATCCAATATGCCACAAGATGAGGATAATCATTGCTTAACAGATGTCCTCCAAGACCTTGACATTAGTGACTTGCTAATGTCGTATGAGGATGATCATCGTCGTTTTAATGGATATGCTTGTGTCGAAATACCCCAACATGTTTTTGAAGATGATGAGACTTGGAGGCTTCATGATAATAATTCCATGGGCGGCGAAGAAGCATGGGAGAAATATGGTACCAGGGTTATATTGCAATTTGGGTGA 810 0.4037 MGRKANCDNQYAINRGPWSAEEDQILINHVQVHGEGKWRELSKRAGLKRCGKSCRLRWLNYLKPDIKRGNISSDEEDLIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTYLRKKVEQKHEKIPSHNNNVPIKLRNDESPGCSKNSLDNVLDPTKSMRCTTKVMMPVNGSVNTMDLITTSWDNHNPSASNMPQDEDNHCLTDVLQDLDISDLLMSYEDDHRRFNGYACVEIPQHVFEDDETWRLHDNNSMGGEEAWEKYGTRVILQFG 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2533 269 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Aed1g2533 269 MobiDBLite consensus disorder prediction 120 148 - -
Aed1g2533 269 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Aed1g2533 269 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Aed1g2533 269 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Aed1g2533 269 MobiDBLite consensus disorder prediction 130 148 - -
Aed1g2533 269 CDD SANT 72 113 IPR001005 -
Aed1g2533 269 Gene3D - 15 67 - -
Aed1g2533 269 Gene3D - 71 138 - -
Aed1g2533 269 SMART sant 67 115 IPR001005 -
Aed1g2533 269 SMART sant 14 64 IPR001005 -
Aed1g2533 269 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 1 250 - -
Aed1g2533 269 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 250 - -
Aed1g2533 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Aed1g2533 269 CDD SANT 17 62 IPR001005 -
Aed1g2533 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 62 IPR017930 -
Aed1g2533 269 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2533 Aed-Chr1 21014135 21015545 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2533 7 132 MYB Transcription Factor Family AT3G13540 62.879 9.98e-58 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed1g2533 Myb_DNA-binding 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2533 K09422 - gmx:100780809 440.269