Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2532 ATGGCAACAAACAGGTTCATATGTGAGGTGTGCAATAAAGGGTTCCAAAGGGAGCAAAATCTACAGCTACACAGAAGAGGACACAACCTGCCTTGGAAGCTAAAGCAGAAGAGTACAAAAGAGCCAAAAAGAAAGGTTTATCTGTGTCCCGAACCCACTTGCGTCCATCATGATCCTTCAAGGGCTTTGGGAGACCTCACTGGGATCAAGAAGCACTACTCTCGCAAACACGGCGAGAAGAAGTGGAAGTGTGAAAAGTGCTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCACATTCTAAAACTTGTGGCACTAGAGAATACAGATGTGACTGTGGCACTCTCTTCTCTAGGCGTGACAGTTTCATCACTCATAGGGCCTTTTGTGATGCACTAGCACATGAGAGTGCGAGATTCCCGAGTGGCTTAAACCCATTGGGGACTCATTTGTTTGGCACAAACCACAGTCACACTAGCTTAAGCCTATCCCAAGTGGGTACCCAACTTTCCCAAGTTCAAAAGCAGAACCAAACCGCCACTAATAACAGCATTTTGCGCCTTGGCAATGTTGGTGCAGCAACAAAGTTCGAGCACTTGATTCCACCTCTAAATCAGTCTTCATTTGGACACTCACCACAGTCAATGCCAGCTTCCTCAGCTTTCTTCCTGAATCATCATGACAACACAAATCAAGCATTGTTTGAAGAACACGTCCAATCACAACAAGGACCAATGTTCTCAAACAAGCAACTACAGGGCCTAATGCAACTCCAAGATCTTCAAGGCAACACAAACAACTCTGATTCTTCATCAGTTTCTGCTCCTAATTCCAATCTTTTCAACCTCAGCTTCTACCCAAGTAGCAGTATTAGCACTGGCACCATAATCCCTGATCAATTCAACAACATAAGTGGTGATGCTGACCAAGGAACAACAACAACAACAACAACAACAACACTCTATGGAAATTCAATAGAAAACGTGTCATCCCCTCATGTTGGATCGAGTTTTTCTTCTATCTTTGGCAATTCAATGGAAAACGCGTCATCCCCTCATATGTCTGCCACTGCGTTGCTTCAACACGCTGCTCAAATGGGTTCAACAACAACCACCAACGGTTCTTCTTTGCTTAGAGGAATGTGTACTAATAACAATGGTGGTACCAAAGCTGAAAATGACCACCACCACCACCACAATCTTCAAGGGTTGATGAACTCTATTGCCAACGGAAACACGTCGTCCATGTTTGGAAACATGCAAGGGAACGAAAACAACAACCTTTGTGGGTTTCACAACGTGGATGATGAGTCCAACAATAAGTTGCCCCAGAATCTGAATGTAAACTTTGGAGGTTCTGATAAGTTGACCTTAGACTTTTTGGGTGTTGGAGGAATGATGAGAAACATGACTGGTGGATTTTCACAACAACAACAACAACGTGTCATGGGTACTATGAGTTCTTTGGACCATGACCTAAAGTCAGCAGCACAGTCAAATCTTCATTTTGGAAAGTCAACATTGCAATAA 1530 0.4346 MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAHESARFPSGLNPLGTHLFGTNHSHTSLSLSQVGTQLSQVQKQNQTATNNSILRLGNVGAATKFEHLIPPLNQSSFGHSPQSMPASSAFFLNHHDNTNQALFEEHVQSQQGPMFSNKQLQGLMQLQDLQGNTNNSDSSSVSAPNSNLFNLSFYPSSSISTGTIIPDQFNNISGDADQGTTTTTTTTTLYGNSIENVSSPHVGSSFSSIFGNSMENASSPHMSATALLQHAAQMGSTTTTNGSSLLRGMCTNNNGGTKAENDHHHHHNLQGLMNSIANGNTSSMFGNMQGNENNNLCGFHNVDDESNNKLPQNLNVNFGGSDKLTLDFLGVGGMMRNMTGGFSQQQQQRVMGTMSSLDHDLKSAAQSNLHFGKSTLQ 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2532 509 SMART c2h2final6 6 28 IPR013087 -
Aed1g2532 509 SMART c2h2final6 82 102 IPR013087 -
Aed1g2532 509 SMART c2h2final6 47 77 IPR013087 -
Aed1g2532 509 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Aed1g2532 509 Gene3D Classic Zinc Finger 60 138 - -
Aed1g2532 509 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 479 - -
Aed1g2532 509 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 479 - -
Aed1g2532 509 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Aed1g2532 509 Pfam Zinc-finger double-stranded RNA-binding 6 28 IPR022755 -
Aed1g2532 509 SUPERFAMILY beta-beta-alpha zinc fingers 5 102 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2532 Aed-Chr1 21003968 21008264 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2532 1 470 C2H2 Transcription Factor Family AT2G02080 44.779 2.73e-115 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed1g2532 zf-C2H2_jaz 3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2532 K25870 - gmx:100780268 811.601